Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00823 ATGCCGAAACACCAAACAACCTTAATGGAACCTGTTCTCACCCACAACCCCGGCAATGCCAAACCCAACTATGACTATGATGTCATAAACTGGTTTGAACATGTATCCCATAATGCTGGTTTTGTCCAGACTCAGTTGCTCACCCAGATTTTGAAGCAAAACTATGGAGTGGAATATCTCAAGAAATGGTTGGGGAACTACAATATCCTTGAGATGGACGCATGTGCATTGGAATCCCTTTTCTGTTCTGTGGTTCCCCTTGCCTCACACGCTGACTTTGAGCCATTTATCCAAAGGATTGCTGATGGGGACACAGCTCCTTTACTCACTCAACGACCCATAACCACTCTTTCCTTAAGCTCTGGAACAACAGATGGAAGGCAAAAGTTCGTACCCTTTACTCGCCATAGTGCACAAACCACGCTTCAAATATTCACTCTAGCAGCAGCCTATAGATCAAGGGTTTATCCAATAAGGGAAGGAGGAAGGATTCTTGAATTCATATACAGCAGCAACAGGTTCAAAACAAAAGGAGGTTTAACAGCAGGAACAGCCACAACACACTACTATGCAAGTGAAGAATTCAAAATCAAGCAGGATGCGACCAAATCCTTCACTTGCAGTCCCCAAGAAGTGATTTCTGGTGGAGACTACAAACAATCCACGTATTGCCACCTCCTTCTTGGTCTCTTTTACTCTGACCAAGTGGAATTTATCACCTCAGCTTTCATCTACAGCATGGTGCAAGCTTTCAGCAGTTTTGAAGAAAATTGGATGGAGATTTGCAATGACATCAGAGATGGCACTCTTAGTTCAAGAATCAAGTTACCAAAAATGAGAAAGGCTGTTTTGGACATCATCTTTCCAAGCCCAGATTTGGCTTCGAAGTTGGAAAGTGCTTGCCATGAGCTAGAACTGGTAGAGTGGTCTGGTTTAATTCCTAAACTCTGGCCAAATGCTAAGTATGTCTACTCCATAATGACAGGGTCCATGCAACCATATTTGAAAAAGCTTAGGCATTATGCAAATGGGTTGCCTTTAGTTAGTGCCGATTATGGCTCAACTGAGAGCTGGATAGGGGTTAATGTTGATCCTAGTTTACCACCAGAAAATGTAACATTCGCCGTGGTTCCTACTTTCTCTTACTTTGAGTTCATACCACTTCACAGGAATGAAAAAAAACTTAGTTCAGGAGCTGATGATTTCACGGAAGATAAGCCAATTCCTCTCTCTCAGGTTAAACTAGGACAAGAGTATGAAGTTGTCCTCACAACTTTCACCGGACTATACAGGTGCAGATTAGGGGATGTGGTGGAAGTGGGTGGCTTCTACAATGGGACCCCAAAGTTGAACTTTGTGTGTAGAAGAAAGCTAATTTTGATAGTAAACATAGACAAGAACACAGAAAAGGACCTTCAACTAGTGGTAGAAAGAGGGTCCCAGATTCTGACAAAGGGAAAGGCCGAGCTGGTTGATTTCACAAGCTATGCAGATGTGTCAAAGCAACCAGGGCACTACGTAATATTTTGGGAGATAAAAGGGGAGGTAGACGACAAGATCCTCGGTGCATGTTGCACTGAAATGGACAAATTGTTCATGGATCATGGCTATGTGGTGTCAAGAAAAACCAACTCGATAGGGCCCTTAGAGCTCTGCATTTTGGAGACTGGGACTTTCAAGAAGATTCTGGACAACTTCATCGCAAATGGGGCAGCCTTGGGCCAATTCAAAACCCCCAGGTGCACCACCAATCGTGTCCTTCTTAAAATTCTCAACACGTGCACCACAAAAAGGTTTCAAAGCGCTGCTTACAACACTTGA 1821 0.4349 MPKHQTTLMEPVLTHNPGNAKPNYDYDVINWFEHVSHNAGFVQTQLLTQILKQNYGVEYLKKWLGNYNILEMDACALESLFCSVVPLASHADFEPFIQRIADGDTAPLLTQRPITTLSLSSGTTDGRQKFVPFTRHSAQTTLQIFTLAAAYRSRVYPIREGGRILEFIYSSNRFKTKGGLTAGTATTHYYASEEFKIKQDATKSFTCSPQEVISGGDYKQSTYCHLLLGLFYSDQVEFITSAFIYSMVQAFSSFEENWMEICNDIRDGTLSSRIKLPKMRKAVLDIIFPSPDLASKLESACHELELVEWSGLIPKLWPNAKYVYSIMTGSMQPYLKKLRHYANGLPLVSADYGSTESWIGVNVDPSLPPENVTFAVVPTFSYFEFIPLHRNEKKLSSGADDFTEDKPIPLSQVKLGQEYEVVLTTFTGLYRCRLGDVVEVGGFYNGTPKLNFVCRRKLILIVNIDKNTEKDLQLVVERGSQILTKGKAELVDFTSYADVSKQPGHYVIFWEIKGEVDDKILGACCTEMDKLFMDHGYVVSRKTNSIGPLELCILETGTFKKILDNFIANGAALGQFKTPRCTTNRVLLKILNTCTTKRFQSAAYNT 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00823 606 Pfam GH3 auxin-responsive promoter 31 585 IPR004993 -
Vian5g00823 606 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 27 603 IPR004993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00823 Vian-Chr5 28378519 28382878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00823 27 601 EF-hand Containing Proteins AT1G23160 35.085 2.99e-117 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00823 K14487 - gmx:100792358 1060.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00823 5 28378519 28382878 Vian5g00823 5 28378519 28382878 ECH