Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00599 ATGCGCGCCCCCGCCGGAAGAAACCTATCCACTCTCGCCGCCCTCGTTCGCTCTCGGTTAATCCGCAAACCCAACACCAGTGTTGAATCCTTTATAGCACCTTCTCCTGAATTCGAAGTCGGTTTTGGTTCTGAACTGCAACATTCCTTAGAACACGACCTCGCTGGTGACTTTTCCCTAGGGGATTTGGTCGGCGAAGATGAGGGTACTGGGCAGATATCTGCTTTACTGTGCTCTAAACAGGACAAGGGGTCTGGTTACGAGGAAGTCGACCAGGAAGAAAAAAGGAAAAGTGCGTTAGAAATACCATGGATAGCAGACCTGTCTCATGGCGTAAAGGAGTACAATGCATTGATAAAAGTGTGCATAGAGAAGGCTAGGGCGACTGATGATGAATACATAGCTGTAAATGAGATGAGTAAGGCTTTTCACCTTTTCAAATCAATGAGGGATTTTGGATGTCCGCTGGAAGAGCAAACATATGGTCCACTTCTCTGGTATCTAATTGATATGGGTCTGGTTCAAGAATTTCAACTTTTCTCTGATGTTATCAAAGCTGAGAATCCTCGTTCAGCTTCACGATTGGGTTACTATGAAATGTTGTTGTGGTTAAGAGTTGACAATGAAGAAATGATCCGGGACATTTGCGAGTTTATTATAGTTGATGATAGAGATTCAGCCTTACGAGCAAGTTGTAAGAAATTTATGAATGCCAACCTCGGTGGTTGCACATCTAAACTCCGACCAACAGCTGTCCAACTGCTGCACTGCTCTAGGCACATGTCTCAAGTGCCATCTTTTGGTGGTCAGAATCTTCTTAGACTACCACGGTTTGACTTGTTGGAGCATTTTGGGCCCATTTCTGCCCTTTTAAGTTACTTGATGGCTCTTTGTGAAAGTGATAAGACAATGCAACTTTTGGATGTGGTGAAGAATGTAGACATCATCAAGCTTTTATCTGCAGAATGTATTGTAAATATATTCCGATCATTAGGCAGGCTCCAACAGCAATCTGTTGCAGATGACATACTTTTGGATTTGAGAACACGTGATTATGATGAAGATAATATTTCAAACTTCATTGTTAGTTATGCTGTTAGCATTCCTAATTTAGCGGTTGAGGACATCATGGCAAAAGTCAATAATTTGCATGAATTACTAGAAGTCTTGCTTTCATCGTCATCATATGAAAAGCTTATTTTGCATTGCTGTGGTTTAGACCAGGTGGGCGATGCTCTAGATATTGTTGAACAAATGTGTGATGCTGGCTTTAACTTGTCAACTGACGTGTTACAATTCATATTACAAATCTGCGAGGAATCTTTTGAATATATTTGGTTTGAAGGCGCATACAAAATAATTGGTGACATAGAGGAAATGAATGTTAAACTTACGGCAAACATGTTCAATGCTATAATGGCAGGATATTTTCGAGAGAAGAATATCAGTGCTGGGTTAAGGGTCCTGAAACACATGCAAGGTGCCAATGTAGACCCTGATTCTCAGACTTTCAGCTATTTGATCAACAATTGTGAAACGGAAGAGGATATAATGAAGTATTGTGATGAAATGAAGCAATCTGGAATTCAACCTACAAAGCAAGTTTTTATGGCCCTTGTTCATTCATACGCAGCTTGTGGAAATTTGGAGAAGGCAAAACAGTGTGGTGGTTGTGTGGCCAAGATGAGCACAACAGTCAGTTCTAACCGTGGTAGTGGTGGCGGTTGCAACATGGCAGGAGTACCAGTCTGGGTAGTTTTGGATCCAAACATACCAGTCAAGATCTTAAATGAAATCAAGAGTGTACTTGTCGTAAATCTTGTATCACATGGGCAATTGTCCGAGGCTCTCCTTGTCTATGAACAGATTAAGAAAGGTGGACATAAGTTGGAGCCAAAAGCAATTACATGTCTAATTGAAGAGTTGACTCAACACAATGGGGAGTTGGATGGATTGCTACTTCTACTCAACGAAATGAGTGATCTAGACTATTGGGTTGATGGCTGTTTCAAGGTCATCTTGTACTGTGCACGGAACAATAATTTGAGCTCTGCTATTCTTTTGCTCAAACAACTCAAGGATACGTTTGAAAATGATGAAATGGTACTGGAAGCCCTTTTTGACGGAGTATTTTCTGCAATTGTAGCATCAGAGGCCACTCATTTACAGATTGGCCTGGACTTGCTTTGGGCAATCAAGGATGAACTGGGTCTTAGGCCCTCACGGCAGTGTCTTGATTTTCTTCTAAGTGCTTGTGCCAATGCTGGAGATTTGAACAATGCTCGCTTGATTTGGAGGGAGTACGAGATTGCTGGGTTTCCTTACAATGTATTAAGTTACTTGCGAATGTATCAAACACTTTTGGCAGCTGGAGATGGCAGATCTGCATCCTTTATCCTTAAGAAAATTCCTCGAGACGATGCGGAGGTTTGTGCTGTCATCATGGCATGTGCGGAAACATATAGTGCTCTTAATTCTGTAGGAGAGAAGAAAGAGCAAGGAAAACGTAAAGGAAGAAAGAGCAAAACCTGA 2532 0.4171 MRAPAGRNLSTLAALVRSRLIRKPNTSVESFIAPSPEFEVGFGSELQHSLEHDLAGDFSLGDLVGEDEGTGQISALLCSKQDKGSGYEEVDQEEKRKSALEIPWIADLSHGVKEYNALIKVCIEKARATDDEYIAVNEMSKAFHLFKSMRDFGCPLEEQTYGPLLWYLIDMGLVQEFQLFSDVIKAENPRSASRLGYYEMLLWLRVDNEEMIRDICEFIIVDDRDSALRASCKKFMNANLGGCTSKLRPTAVQLLHCSRHMSQVPSFGGQNLLRLPRFDLLEHFGPISALLSYLMALCESDKTMQLLDVVKNVDIIKLLSAECIVNIFRSLGRLQQQSVADDILLDLRTRDYDEDNISNFIVSYAVSIPNLAVEDIMAKVNNLHELLEVLLSSSSYEKLILHCCGLDQVGDALDIVEQMCDAGFNLSTDVLQFILQICEESFEYIWFEGAYKIIGDIEEMNVKLTANMFNAIMAGYFREKNISAGLRVLKHMQGANVDPDSQTFSYLINNCETEEDIMKYCDEMKQSGIQPTKQVFMALVHSYAACGNLEKAKQCGGCVAKMSTTVSSNRGSGGGCNMAGVPVWVVLDPNIPVKILNEIKSVLVVNLVSHGQLSEALLVYEQIKKGGHKLEPKAITCLIEELTQHNGELDGLLLLLNEMSDLDYWVDGCFKVILYCARNNNLSSAILLLKQLKDTFENDEMVLEALFDGVFSAIVASEATHLQIGLDLLWAIKDELGLRPSRQCLDFLLSACANAGDLNNARLIWREYEIAGFPYNVLSYLRMYQTLLAAGDGRSASFILKKIPRDDAEVCAVIMACAETYSALNSVGEKKEQGKRKGRKSKT 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00599 843 Gene3D Tetratricopeptide repeat domain 601 843 IPR011990 GO:0005515
Vian5g00599 843 Gene3D Tetratricopeptide repeat domain 93 193 IPR011990 GO:0005515
Vian5g00599 843 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 465 499 IPR002885 -
Vian5g00599 843 NCBIfam pentatricopeptide repeat 468 500 IPR002885 -
Vian5g00599 843 Pfam PPR repeat family 468 511 IPR002885 -
Vian5g00599 843 Gene3D Tetratricopeptide repeat domain 392 591 IPR011990 GO:0005515
Vian5g00599 843 PANTHER OS02G0132600 PROTEIN 585 832 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00599 Vian-Chr5 21765445 21789880 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00599 - - adu:107477993 753.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00599 5 21765445 21789880 Vian5g00599 5 21765445 21789880 ECH