Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00470 ATGGGAAACTCGCAAGCCAAAAAGCGTCACATTCCCTCTCCCACCGTAACCAGAAACTTGTCACCACAACCACGACCGTCGTCGTCGCCGGAATCATCAAGAAAACCACCGCGAGAGCCACCCCCGGCGCAACATCATGGTTCTGGAAAACTATATGCGAAAGAGAAATACGCTCTGATTCCTGATAACTTCACTACGCTTGAACAGGTTACAACTGCCTTGAGGAACGAAGGTTTAGAATCATCAAATCTTGTTCTTGGAATTGATTTTACGAAAAGTAATGAATGGACTGGAAGTATCTCATTCAACAATAAAAGCCTACATGCTATTGGAAGTACACCTAACCCGTATGAGAAAGCCATCTCTATCATTGGCAAGACTCTGGCTCCGTTTGATGATGACAACTTGATTCCTTGTTTTGGCTTTGGTGATGCCACCACTCATGATCAAGAAGTGTTTAGCTTTCACAGTGATCATTCATCTTGCCATGGATTTGAGGAAGTTTTGGCTTGTTATCAAAAAGTTGTTCCAAACTTAAGACTTTCAGGACCAACTTCTTACGCTCCAGTGATTGAGGCTGCAATAGACATAGTTGAGCAAAGTCATGGCCAATTCCATGTGTTAGTTATTGTTGCAGATGGCCAGGTTACGACAAGCGGTGACGATGGAGAACTAAGTCCACAAGAAGCAAGAACTATCAAAGCAATAGCTGATGCAAGTTCATATCCCCTGTCTATTATTCTGGTCGGAGTTGGTGATGGACCTTGGGATGACATGAAGAAGTTCGATGACAAGATTCCGGTTCGCGACTTTGACAATTTTCAGTTTGTTAACTTCACTGACATAATGTCTAAGAAATCAAGCTCCTCTGAAAAAGAAGCTGCTTTTGCTCTGGCTGCTCTAATGGAGATACCTTTCCAATATAAAGCAGCCATTGAACTAGGACTACTAGGTCGAGTAACAGGAAGGTCAAATAAAATTGTTCCGAGACCTCCTCCAGCTCCTTATTCTAGGCTTGTGCCACCAGCTCGTGTTCTCAGCAATATGCCAACTTCCATGGATGATGAGAGAAATCAAATGGCATGTGCCATTTGTCTGACAAGTAGAAAGGATTTGGCCTTTGGATGTGGTCACATGACTTGCAGAGACTGTGGATCCAGGTTAACTAACTGTCCAATATGCCGTCAGAGGATCACCAATCGTCTGAGAGTGTTTTCTGGCTGA 1224 0.4363 MGNSQAKKRHIPSPTVTRNLSPQPRPSSSPESSRKPPREPPPAQHHGSGKLYAKEKYALIPDNFTTLEQVTTALRNEGLESSNLVLGIDFTKSNEWTGSISFNNKSLHAIGSTPNPYEKAISIIGKTLAPFDDDNLIPCFGFGDATTHDQEVFSFHSDHSSCHGFEEVLACYQKVVPNLRLSGPTSYAPVIEAAIDIVEQSHGQFHVLVIVADGQVTTSGDDGELSPQEARTIKAIADASSYPLSIILVGVGDGPWDDMKKFDDKIPVRDFDNFQFVNFTDIMSKKSSSSEKEAAFALAALMEIPFQYKAAIELGLLGRVTGRSNKIVPRPPPAPYSRLVPPARVLSNMPTSMDDERNQMACAICLTSRKDLAFGCGHMTCRDCGSRLTNCPICRQRITNRLRVFSG 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00470 407 SMART ring_2 362 394 IPR001841 -
Vian5g00470 407 MobiDBLite consensus disorder prediction 1 49 - -
Vian5g00470 407 SUPERFAMILY vWA-like 82 263 IPR036465 -
Vian5g00470 407 ProSiteProfiles Zinc finger RING-type profile. 362 395 IPR001841 -
Vian5g00470 407 SMART VWA_4 81 282 IPR002035 -
Vian5g00470 407 SUPERFAMILY RING/U-box 356 401 - -
Vian5g00470 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 348 406 IPR013083 -
Vian5g00470 407 Pfam Zinc finger, C3HC4 type (RING finger) 359 399 - -
Vian5g00470 407 Pfam Copine 106 317 IPR010734 -
Vian5g00470 407 Gene3D von Willebrand factor, type A domain 80 296 IPR036465 -
Vian5g00470 407 MobiDBLite consensus disorder prediction 1 28 - -
Vian5g00470 407 PANTHER COPINE FAMILY PROTEIN 1 49 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00470 Vian-Chr5 12880102 12889039 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00470 K16280 - gmx:100795579 684.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00470 5 12880102 12889039 Vian5g00470 5 12880102 12889039 ECH
Vian11g01370 11 22680190 22690878 Vian5g00470 5 12880102 12889039 PCT