Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00259 ATGGCGACTCAAAGACTAGCTTTGATCACACTTCTCTTAACCCTTTCCACGCTCTCTTCCTCACGCGCTGACAATGGTGGCATCGCCGTGTACTGGGGGCAAAACCTTAACGAAGGCGAATTGACAACCGCATGTGACACTGGTAACTATGAAATTGTGCTCCTCGCTTTCCTCACCCAGTTCGGTGCAGGGAGAACCCCAGCTTGGAACTTCGCCGGTCACTGCGACAATGGTGCCTGGAAACATTGCACTGAACTAGAGTCCGAAATAAAATACTGCCAGGGGAAAGGCATCAAAGTGCTCCTTTCAATTGGAGGAGACAGTCCGAACTACTCACTAAGCTCGCCGGAGGATGCAAAGGAGGTGGCCAACTACATCTACACCAACTTCCTAAGCGGCAATTACGGTCCAGTGGGAAGCGTCACGCTGGACGGCGTCGACTTCGACATCGAAAGGACGGAGGATTACTGGGACAACCTTGCCAGGGAACTCGACTACTTCCGACAAACGACAGGGCGTTACTTTTACTTGTCGGCAGCCCCTCAGTGCCCTACAGACCCAATCTACTATCTCGGCAAAGCCATCGCCACCGAACTCTTCGACTACATCTTCGTTCAGTTCTACAACAACCCAAGTTGCTCCTACGCAAGTGGCATCCCCGCTATCTTGAACTCCTGGGACAAGTGGGTAAGCTTGGTCGCCTCCAACAACTCGCTCTTCGTTGGCGTGCCAGCAGCGCCCAGCGCTGGCAATGGTTACATTTCGCCGGAGGTACTCAACACCCAGGTGCTTCCGCACGTGAAGCAAGCCCCCAACTACGGGGGAGTGATGCTGTGGGATAGATACCGCGATCTTCAGAGCGGTTACAGTAATAGCATACTGTCCAATGTGATTAAATCTAAGTTGCAGGTGTCTGTGGCGTCCGTTTCCGACGCAATTTACCGGTGCGTGTCCAAGGCGTTGAACCGCGTCTTAGATTACTAG 984 0.5295 MATQRLALITLLLTLSTLSSSRADNGGIAVYWGQNLNEGELTTACDTGNYEIVLLAFLTQFGAGRTPAWNFAGHCDNGAWKHCTELESEIKYCQGKGIKVLLSIGGDSPNYSLSSPEDAKEVANYIYTNFLSGNYGPVGSVTLDGVDFDIERTEDYWDNLARELDYFRQTTGRYFYLSAAPQCPTDPIYYLGKAIATELFDYIFVQFYNNPSCSYASGIPAILNSWDKWVSLVASNNSLFVGVPAAPSAGNGYISPEVLNTQVLPHVKQAPNYGGVMLWDRYRDLQSGYSNSILSNVIKSKLQVSVASVSDAIYRCVSKALNRVLDY 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00259 327 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 143 151 IPR001579 GO:0004553|GO:0005975
Vian5g00259 327 SUPERFAMILY (Trans)glycosidases 24 293 IPR017853 -
Vian5g00259 327 Pfam Glycosyl hydrolases family 18 28 284 IPR001223 GO:0005975
Vian5g00259 327 FunFam Acidic endochitinase SE2 26 297 - -
Vian5g00259 327 CDD GH18_hevamine_XipI_class_III 26 293 IPR045321 -
Vian5g00259 327 PANTHER ENDOCHITINASE 8 294 - -
Vian5g00259 327 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 26 305 IPR001223 GO:0005975
Vian5g00259 327 Gene3D Glycosidases 24 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00259 Vian-Chr5 5423050 5424124 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00259 1 297 Glycoside Hydrolase AT5G24090 48.845 5.18e-95 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00259 K01183 - gmx:547449 355.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00259 5 5423050 5424124 Vian3g00689 3 7048366 7049268 ECH
Vian5g00259 5 5423050 5424124 Vian5g00259 5 5423050 5424124 ECH