Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02580 ATGTCGAGCATCGTCAAGGAGATCCTGGCGAGCCCGATACAAATGGCGGACCAGGTATCGAAGATGGCGGAGGAGGCCCAGAATTTCCGGCAGGAATGTCTCGAGCTCAAATCCAAAACGGAGAAGCTCGCAGGGCTCCTCCGCCAGGCCGCGAGGAACAGCAGCGACCTATACGAGCGTCCCACGCGGCGCATCATCGACGACACCGAACAAGTCCTGGACAAGGCCCTCGTACTCGTCACCAAATGCCGCGCCAACGGTGTCATCAAAAGACTCTTCACCATCATCCCCGCCACAGCCTTCCGCAAGACCTCCATGCAGCTAGAGAATTCCGTCGGCGATGTCCAGTGGCTCCTCCGCGTCTCTGCCTCCGCCGACGAGCGTGACGACGAGTACCTCGGGCTTCCCCCCATCGCCGCCAACGAACCCATCCTCTGCCTCATCTGGGAACAGGTTGCCATTCTCTTGTCCGGTGCCTCCTTGGAAGATCGCTCCGACGCCGCCGCTTCATTGGTTTCGCTCGCTCGCGACAATGACCGTTACGGGAAACTGATCATCGAAGAGGGCGGCGTGGCTCCGCTGTTGAAACTTCTGAAGGAAGGACACTTGGAAGGACAGGAGAACGCTGCCAGAGCCATTGGGCTTCTCGGGAAAGACCCTGAAAGTGTGGAACACATTGTGAACGCCGGTGTTTGTTCCGTGTTTGCCAAAATCCTCAAAGATGGTCACATGAAGGTTCAAGCGGTGGTGGCCTGGGCTATTTCTGAACTCGCTGCCAATCACCCCAAATGCCAGGATCATTTTTCCCAGAACAATGCCATACGCTTGCTCGTTAGCCATCTCGCCTTCGAGACCATTCAAGAGCATAGCAAGTACGCTATTGCCAACAAGACCAGGTCCATTCACACCTTAGTTTTGGAGAGTAATACACCGAACGCGCATGAATATGAAGATGATAAGAACGTTGACCTTCGTCCAACGGGGACGAATACATCTACTCAGATGCACAACGTGGTTTCGAACACCATGGCAATGAAGGGCATTGCCCAAAAAAATAATGCCACTGCCACTGCCACAGCCACGGCTGGGACACCGCACAGCAGCGGCGCTACAAACGCGAAAAAACATCACGGTGGGACACCGCACGTGTCAATTGCTGGGACGAGTATCAAGGGGAGGGAATACGAAGACCCCATCACAAAGGCAGAGATGAAGGCGATGGCAGCCAGAGCCTTATGGCAACTGGCGAGGGGTAACTTGAGTGTGTGTAGGAGCATAACAGAGTCAAGGGCTCTTCTGTGTTTCGCGGTTTTGCTGGAAAAGGGTCCCGAAGACGTGCAATCTTATTCTGCGATGGCGTTGATGGAAATAACGGCCGTGTCGGAGCAACATGCAGAGCTGAGACGCTCTGCATTCAAACCCACCGCCCCTGCTGCAAAGGCTGTTCTGGATCAGCTTCTTAGAGTGATAGAAAACGAACAAGATGACCTGCTCATACCTTGCATAAGATCCGTTGGTAATTTGGCAAGAACTTTCAGAGCCACGGAAACAAGACTGGTTGGGCCATTGGTGAGGCTCCTTGACGAAAGAGAAGCTCATGTTAGCACGGAAGCGGCAATTGCGCTGAACAAATTTGCATGCACAGAAAACTACCTCCACGAGAACCACTGCAACGCCATCATAGAGGCTGGGGGCGCCAAGCACTTGATTCAACTGGTTTACTTTGGGGAGCAAATGGTTCAGATTCCTTCCGTCACTCTCCTTTGTTACATAGCGCTCCACGTCCCCAAGAGCGAGACGCTGGCGCAAGAAGAGGTTCTCATAGTTCTGGAGTGGTGCACCAAGCAGGCACATCTCGTGGAGGAACACAGCATCATTCAACTGCTACCAGAAGCCAAGAGTAGACTCGAACTCTATCAATCAAGAGGAAGAGGATTCCGTTGA 1944 0.536 MSSIVKEILASPIQMADQVSKMAEEAQNFRQECLELKSKTEKLAGLLRQAARNSSDLYERPTRRIIDDTEQVLDKALVLVTKCRANGVIKRLFTIIPATAFRKTSMQLENSVGDVQWLLRVSASADERDDEYLGLPPIAANEPILCLIWEQVAILLSGASLEDRSDAAASLVSLARDNDRYGKLIIEEGGVAPLLKLLKEGHLEGQENAARAIGLLGKDPESVEHIVNAGVCSVFAKILKDGHMKVQAVVAWAISELAANHPKCQDHFSQNNAIRLLVSHLAFETIQEHSKYAIANKTRSIHTLVLESNTPNAHEYEDDKNVDLRPTGTNTSTQMHNVVSNTMAMKGIAQKNNATATATATAGTPHSSGATNAKKHHGGTPHVSIAGTSIKGREYEDPITKAEMKAMAARALWQLARGNLSVCRSITESRALLCFAVLLEKGPEDVQSYSAMALMEITAVSEQHAELRRSAFKPTAPAAKAVLDQLLRVIENEQDDLLIPCIRSVGNLARTFRATETRLVGPLVRLLDEREAHVSTEAAIALNKFACTENYLHENHCNAIIEAGGAKHLIQLVYFGEQMVQIPSVTLLCYIALHVPKSETLAQEEVLIVLEWCTKQAHLVEEHSIIQLLPEAKSRLELYQSRGRGFR 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02580 647 MobiDBLite consensus disorder prediction 355 374 - -
Vian4g02580 647 FunFam Armadillo repeat only 2 382 636 - -
Vian4g02580 647 Pfam Armadillo/beta-catenin-like repeat 184 214 IPR000225 GO:0005515
Vian4g02580 647 Pfam Armadillo/beta-catenin-like repeat 219 259 IPR000225 GO:0005515
Vian4g02580 647 Gene3D - 151 315 IPR011989 -
Vian4g02580 647 Gene3D - 392 632 IPR011989 -
Vian4g02580 647 Gene3D - 3 121 IPR036537 GO:0007166
Vian4g02580 647 MobiDBLite consensus disorder prediction 312 331 - -
Vian4g02580 647 SMART arm_5 419 459 IPR000225 GO:0005515
Vian4g02580 647 SMART arm_5 177 218 IPR000225 GO:0005515
Vian4g02580 647 SMART arm_5 219 259 IPR000225 GO:0005515
Vian4g02580 647 SMART arm_5 553 593 IPR000225 GO:0005515
Vian4g02580 647 SUPERFAMILY ARM repeat 155 616 IPR016024 -
Vian4g02580 647 PANTHER ARMADILLO REPEAT ONLY 4 1 643 - -
Vian4g02580 647 FunFam Armadillo repeat only 4 2 121 - -
Vian4g02580 647 Coils Coil 19 39 - -
Vian4g02580 647 FunFam Armadillo repeat only 2 150 319 - -
Vian4g02580 647 MobiDBLite consensus disorder prediction 355 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02580 Vian-Chr4 42247848 42249791 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02580 - - vun:114164601 1159.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02580 4 42247848 42249791 Vian4g02580 4 42247848 42249791 ECH