Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02470 ATGTTTTCTGGAAGATTGGGGGCAGACGAATCTTATTGTCAAGATTTACAGAATTTGAGTGTGTCAAAGCGACTTGTTAGGAGTTTCAGTCATAGGTTGAAGAAGAAGAATAACAGGAGTACCGGGGAAGAAGATGATGATGTGAATGGAGTTTCTTTAAGATGCTTAAATCTTTATGGACGAGGTGGGGGCTGCAAGGTAGGTGCTGACACCAGTGATGATTTTGGTGATTCAAACAGTAGAAGGAGATCTAGTGCCAGTGACGAGGGAAAGGGATATAAGCCGATTTGTGGCCCTGAAGAAACTGCTGTGGATTGCTTTTCATATGGGGTAAAGGACAGGTTTTGGAGGAGACACAACCGAAAGAATTCAGAGCTTGAAGAATTTTTGACAAACAATAGAATGCATATCTTTCTTCCTGATGATATTCTTGAAATGTGTTTGGTTAGGCTCCCATTGACAAGTCTCATGAATGCCCGACTTGTGTGCAAAAAATGGAGGTCCTTGACCACCACTCCTAGATTTCTCCAAATGAGAAGGGAGGGTTCCTATCAGAGTCCATGGTTATTTCTGTTTGGTGCTGTTAAAGATGGCTTTTGTTCTGGTGAGATACATGCACTGGACGTGTCTCTGAATCAGTGGCACAGGATTGATGCTCATTTTCTCCGAGGAAGGTTTTTGTTCTCTGTTACTGGTATACATGATGATATCTTCATTGTTGGAGGGTGTTCTAGCCTCACTAACTTTGGGAAAGTGGATAGAAGCTCTTACAGGACACACAAAGGGGTTCTTGTTTTTAGTCCATTGACAAAATCTTGGCGTAAAATGCCGTACATGAAATATGCTAGATCAAATCCTATATTAGGAGTCTCTGAGGTCAGTTTGGATTTTCCAACTTGCCAAAGTCATCAAAGCCGGCAGGATAGACGCTTTCCAAGATCAAGGATTGGTGGCATTTCAGATGTTTATGAAGATCCTCACAAGCTTTCACTGAGACGTCACTGCAGATCTTCCATTAATGAGACTGAAGCTTTGTCTTTGCCCAGTCGAAAGGCATACAAATTCGTTAGACAAAAAAGTGACCATTCAAGCTCAAAGGGCAGTAAAAGGTTCTTGTTGATAGCTGTAGGAGGTTTGGGATCCTGGGATGAGCCTCTGGACTCTGGAGAAATCTATGATTCTGTGTCAAATAAATGGACTGAAATCCCAAGATTGCCTTTTGATTTTGGGGTTGCTCGTTCTGGAATTGTTTGTGGCAGGATGTTTTATGTTTATTCTGAAACAGACAAGCTTGCAGCATATGACATAGAACGAGGCTTTTGGATTGGAATTCAAACCACTCCAATCCCGCCTCGTGTACACGAATACTACCCCATACTTGTATCTTCTAGTGGCCGCCTTTTCATGTTTTCCGTGTCCTGGTGTGAAGGGGATGGTCAAATTGGGCAACGAAACAAGGCTGTTAGAAAACTATGGGAGTTGGATCTCACGTATCTTACCTGGACTGAAGCCTCAGTTCATCCTGATGCCCCAATGGACTGGAGTGCTGTTTTTCTGTCGGATAAAAACCTCATTTTTGGGGTAGAGATGTTCAAAATATTTGGTCGGGTGTTAGGTTTTTTCACTGTTTGTGATGTGTCTGATATCACAAAATGGAACCATATTTCAGGGAACCATGTTACTCATGAGCTCGATGGTTCTTCCTGCTTGACCAAATCTGTGGCAGTGCTACACCTTTGA 1740 0.4253 MFSGRLGADESYCQDLQNLSVSKRLVRSFSHRLKKKNNRSTGEEDDDVNGVSLRCLNLYGRGGGCKVGADTSDDFGDSNSRRRSSASDEGKGYKPICGPEETAVDCFSYGVKDRFWRRHNRKNSELEEFLTNNRMHIFLPDDILEMCLVRLPLTSLMNARLVCKKWRSLTTTPRFLQMRREGSYQSPWLFLFGAVKDGFCSGEIHALDVSLNQWHRIDAHFLRGRFLFSVTGIHDDIFIVGGCSSLTNFGKVDRSSYRTHKGVLVFSPLTKSWRKMPYMKYARSNPILGVSEVSLDFPTCQSHQSRQDRRFPRSRIGGISDVYEDPHKLSLRRHCRSSINETEALSLPSRKAYKFVRQKSDHSSSKGSKRFLLIAVGGLGSWDEPLDSGEIYDSVSNKWTEIPRLPFDFGVARSGIVCGRMFYVYSETDKLAAYDIERGFWIGIQTTPIPPRVHEYYPILVSSSGRLFMFSVSWCEGDGQIGQRNKAVRKLWELDLTYLTWTEASVHPDAPMDWSAVFLSDKNLIFGVEMFKIFGRVLGFFTVCDVSDITKWNHISGNHVTHELDGSSCLTKSVAVLHL 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02470 579 Pfam F-box domain 139 175 IPR001810 GO:0005515
Vian4g02470 579 CDD F-box_AtFBW1-like 138 175 - -
Vian4g02470 579 FunFam F-box/kelch-repeat protein At5g42360 364 567 - -
Vian4g02470 579 SMART fbox_2 139 179 IPR001810 GO:0005515
Vian4g02470 579 SUPERFAMILY F-box domain 139 201 IPR036047 GO:0005515
Vian4g02470 579 Gene3D - 346 563 IPR015915 GO:0005515
Vian4g02470 579 ProSiteProfiles F-box domain profile. 133 179 IPR001810 GO:0005515
Vian4g02470 579 Gene3D - 151 294 IPR015915 GO:0005515
Vian4g02470 579 SMART kelc_smart 372 416 IPR006652 GO:0005515
Vian4g02470 579 SMART kelc_smart 236 293 IPR006652 GO:0005515
Vian4g02470 579 MobiDBLite consensus disorder prediction 75 89 - -
Vian4g02470 579 SUPERFAMILY Kelch motif 187 527 IPR015915 GO:0005515
Vian4g02470 579 PANTHER OS09G0555300 PROTEIN 1 579 - -
Vian4g02470 579 MobiDBLite consensus disorder prediction 74 94 - -
Vian4g02470 579 Pfam Kelch motif 373 406 IPR006652 GO:0005515
Vian4g02470 579 Pfam Kelch motif 225 279 IPR006652 GO:0005515
Vian4g02470 579 FunFam F-box/kelch-repeat protein isoform A 152 300 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02470 - - gmx:100813797 1094.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02470 4 41330754 41332493 Vian4g02470 4 41330754 41332493 ECH