Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02460 ATGGATCTTCGCCTAGGGTTCTTCACCTTATTAGCTCTCTTACAGTTCTTTCTAATTTTATCTTCAGTAGAAGCGGACAATTTGTCCACAAGACTTCTTTTGACATCCAATGCCAACACAGTGGGGGAAAAACATTCCCAGGATTACTGTGCAATGTATGACATTTGTGGAAAGCGCAGTGACGGTAAAGTAGTGAATTGTCCATATGGTTCCCCAGCTTTGAAGCCAGATGATTTGCTCTCATCCAAGATCCAAAGTTTGTGCCCAACAATTACTGGGAACGTTTGTTGTACAGAAGCTCAGTTTGACACATTAAGGACGCAAGTCCAACAGGCCATTCCTTTTCTTGTAGGTTGTCCAGCATGCTTAAGAAACTTTTTGAATCTGTTTTGTGAGCTTACGTGTTCTCCGAACCAGAGTTTATTCATCAATGTAACCTCAGTTAACAATGTTGATGGTAATTTGACAGTGGGTGGGATTGATTATTTAATAGCTGATGCTTATGGTGAAGGGTTATATGAATCATGCAAAGAGGTAAAGTTTGGCACTATGAATTCTCGAGCTCTACAGTTCATTGGTGCTGGTGCTCAAAATTTTAAAGATTGGTTTGCTTTTATTGGTAGAAAAGCAGCCCCTGGTGGTCTTGGTTCACCATACGCAATTACATTCAGGTCAAATGCAACCGAGTCATCTGGCATGAAACCTATGAATGTTTCAACTTATTCATGTGGTGATATTTCTCTTGGCTGTTCTTGTGGTGACTGTCCTTCCTCTTCAGTATGCTCCGTTTCATCTTCAACTACCACCAGTAAGAAGGATTCATGCTCCGTGAAAGTTGGGACTTTAGTGGTGAAGTGTGTTGACTTGATTTTGGCAGTCTTGTACATTATACTGATTTGTGTGTTCTTAGGTTGGGGACTGTATCATCGGATAAGAGAAAGAAAACCTACATACAGAACTAAATCAGTGTCTAATGTCATCAGTGATGGTGCCCTGTATACCCGTAACAGGGAGAAGGATGAGAACCTCCCAATGCAGATTCATATGATGGAAGATGCTCGAGAAAACAGACATGAAGTTCGGCTCTCTGCTGTGCAGGGATATATGACAAATTTTTACAGGAAATATGGATCATACGTAGCTAGACATCCGATTGTGGTGTTGGCTTCATCTATCGCTATTGTTCTTCTCCTTTGTGTTGGTCTAATCAAGTTCAAGGTTGAGACACGACCTGAGAAGCTCTGGGTAGGACCTGGAAGCAAAGCAGCACAAGAGAAGGAGTTTTTTGACAGTCATCTTGCTCCATTTTACAGAATTGAACAGCTCATACTGGCAACAGTTCCAGATAATGTAAATAGTACATCACCAAGAATTGTGTCAGAGAACAACATTAAGTTTCTGTTTGAAATACAGAAAAAGGTTGATGCAATTCGTGCTAATTATTCTGGTTCGATGGTATCTCTGCAAGACATCTGTATGAAGCCACTAGACAAAGATTGTGCCACTCAAAGTGTCCTGCAGTACTTCAAAATGGATCCCAAAAATTTTGATGATTACGGGGGAGTTGAGCATCTCAATTACTGTTTCGAGCATTATTCCTCAGCAGACCAATGTATGAGTGCATTTAAAGCTCCTCTTGATCCAAGCACTGTATTAGGAGGATTTTCTGGAAATGATTATTCAGGGGCATCTGCATTCATTGTAACTTATCCAGTAAATAATGCTGTTGATAAAGAAGGTAATGGAACAAGAAAGGCAGTTGCTTGGGAGAAGACCTTTGTTCAGCTGGTGAAGGATGAACTGTTACCAATGGTACAATCGAGAAATTTGACGCTAGCTTTTTCATCTGAAAGCTCTGTTGAAGAAGAGTTGAAAAGAGAAAGTACTGCAGACGCTATTACTATATTGGTTAGCTATCTTGTGATGTTTGCGTATATATCTCTTACTCTAGGGGATACACTGCAGCCTTCATTTTTCTATATTTCTTCAAAGGTACTACTTGGCCTTTCTGGAGTCATTCTTGTTTTGTTGTCTGTCCTTGGGTCGGTTGGATTGTTTAGTGTGCTTGGTGTAAAATCTACTCTGATCATCATGGAAGTTATCCCTTTTCTTGTCCTAGCCGTTGGGGTGGATAATATGTGTATACTAGTTCATGCGGTAAAAAGACAACGACTGGAGTTGCCCTTAGAAGAACGATTAAGCAATGCACTTGTTGAAGTTGGACCATCAATAACCTTGGCCAGTGTTTCAGAGGTTTTAGCATTTGCAGTTGGGAGTTTTATTTCCATGCCTGCAATCCGTGTGTTTTCCATGTTTGCTGCATTGGCTGTTCTTTTGGACTTTCTCCTGCAAGTTACTGCTTTTGTTGCTTTGATTGTTCTTGACTCTTTGCGGGCGGAGGATAAGAGGGTTGACTGTTTTCCATGCATAAAAGTACGTGCGGACCCTGATATAGGTATTGGACAAAGAAAACCTGGCTTATTGGCTCGATATATGAAGGAGGTTCATGCTCCCATTCTGAGTATATGGGGTGTAAAAATAGTTGTCATAGCTGTTTTTGTGGGATTTGCATTTGCTAGCATTGCATTGAGCACTAGAGTTGAACCTGGTTTAGAGCAAGAGATTGTTCTTCCTCGAGATTCGTATCTTCAGGGTTATTTTAGTAATGTTTCAGAATATCTCAGAATTGGACCTCCTGTGTATTTTGTTGTGAAAAACTATAATTACAGCTCAGAATCTCCACAAACAAACCAGCTTTGCTCCATTAGCCGATGCAATTCAGACTCTCTTTTAAATGAGATTGCTAAAGCGGCCCTAGTACCAGACACAAGTTATATTGCCAAGCCAGCTGCCTCATGGCTTGATGATTTTCTAGTCTGGGTATCTCCAGAAGCATTTGGGTGCTGCAGGAAGTTTACAAATGGGAGTTATTGCCCTCCTGATGATCAGCCTCCTTGCTGTGCTCCTGGGGACAGCTCCTGTGTTTCAGTAGGAACATGTAAAGATTGCACAACGTGTTTCCGTCACTCAGATCTCCAGAATGATCGTCCATCTACAACTCAATTTAGGGAGAAACTGCCATGGTTCCTTAGTTCTCTGCCATCTGCTGATTGTGCAAAAGGGGGTCACGGGGCATACACCAGCAGTGTTGAACTGAAAGGCTACAACAATAGCATTATTCCCGCCTCATCATTTCGTACATATCATACCCCACTTAACAAGCAGATTGACTACGTTAATTCTATGAGGGCTGCTCGAGAGTTCAGTGCAAGAGTTTCTGATTCTTTAAAGATTGAGATCTTTCCATATTCAGTGTTTTATATGTTTTTCGAGCAATACCTTCATATATGGAAGACTGCACTGATCAACCTTGCTATAGCTATTGGTGCAGTTTTTATCGTGTGCTTGGTTATCACGGGCAGTTTATGGAGTTCATCAATAATTTTGTTGGTCTTGGCAATGGTTGTTGTTGATCTTATGGGAGTGATGACCATTCTGAATATCCAGTTGAATGCTCTCTCGGTGGTCAACCTTGTTATGTCAGTGGGCATTGCTGTTGAGTTTTGTGTGCATATGACTCATTCTTTCAGTGTAGCAAGTGGAGACAGAGATCAACGTGCTAAGGAAGCTTTGAGTACAATGGGCGCTTCAGTGTTCAGTGGCATCACATTAACAAAGCTGGTTGGAGTTATTGTTCTTTGCTTCTCAAGAACAGAAGTATTTGTGATTTATTACTTTCGGATGTACTTGTCGTTAGTGCTTCTTGGTTTCTTGCACGGACTTGTCTTTTTACCGGTGGTATTAAGCATCTTTGGTCCACCTTCAAGATGTTCTATCACTGAGCAAGGGGAAAATCGTTCATCAACATCTTCACGGCAGTAA 3882 0.4116 MDLRLGFFTLLALLQFFLILSSVEADNLSTRLLLTSNANTVGEKHSQDYCAMYDICGKRSDGKVVNCPYGSPALKPDDLLSSKIQSLCPTITGNVCCTEAQFDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVNNVDGNLTVGGIDYLIADAYGEGLYESCKEVKFGTMNSRALQFIGAGAQNFKDWFAFIGRKAAPGGLGSPYAITFRSNATESSGMKPMNVSTYSCGDISLGCSCGDCPSSSVCSVSSSTTTSKKDSCSVKVGTLVVKCVDLILAVLYIILICVFLGWGLYHRIRERKPTYRTKSVSNVISDGALYTRNREKDENLPMQIHMMEDARENRHEVRLSAVQGYMTNFYRKYGSYVARHPIVVLASSIAIVLLLCVGLIKFKVETRPEKLWVGPGSKAAQEKEFFDSHLAPFYRIEQLILATVPDNVNSTSPRIVSENNIKFLFEIQKKVDAIRANYSGSMVSLQDICMKPLDKDCATQSVLQYFKMDPKNFDDYGGVEHLNYCFEHYSSADQCMSAFKAPLDPSTVLGGFSGNDYSGASAFIVTYPVNNAVDKEGNGTRKAVAWEKTFVQLVKDELLPMVQSRNLTLAFSSESSVEEELKRESTADAITILVSYLVMFAYISLTLGDTLQPSFFYISSKVLLGLSGVILVLLSVLGSVGLFSVLGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQRLELPLEERLSNALVEVGPSITLASVSEVLAFAVGSFISMPAIRVFSMFAALAVLLDFLLQVTAFVALIVLDSLRAEDKRVDCFPCIKVRADPDIGIGQRKPGLLARYMKEVHAPILSIWGVKIVVIAVFVGFAFASIALSTRVEPGLEQEIVLPRDSYLQGYFSNVSEYLRIGPPVYFVVKNYNYSSESPQTNQLCSISRCNSDSLLNEIAKAALVPDTSYIAKPAASWLDDFLVWVSPEAFGCCRKFTNGSYCPPDDQPPCCAPGDSSCVSVGTCKDCTTCFRHSDLQNDRPSTTQFREKLPWFLSSLPSADCAKGGHGAYTSSVELKGYNNSIIPASSFRTYHTPLNKQIDYVNSMRAAREFSARVSDSLKIEIFPYSVFYMFFEQYLHIWKTALINLAIAIGAVFIVCLVITGSLWSSSIILLVLAMVVVDLMGVMTILNIQLNALSVVNLVMSVGIAVEFCVHMTHSFSVASGDRDQRAKEALSTMGASVFSGITLTKLVGVIVLCFSRTEVFVIYYFRMYLSLVLLGFLHGLVFLPVVLSIFGPPSRCSITEQGENRSSTSSRQ 1293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02460 1293 Pfam Patched family 1062 1271 IPR003392 GO:0016020
Vian4g02460 1293 Pfam Patched family 423 906 IPR003392 GO:0016020
Vian4g02460 1293 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 594 794 - -
Vian4g02460 1293 Pfam Niemann-Pick C1 N terminus 48 277 IPR032190 -
Vian4g02460 1293 PANTHER NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1 40 1284 - -
Vian4g02460 1293 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 1080 1272 - -
Vian4g02460 1293 FunFam NPC intracellular cholesterol transporter 1 588 805 - -
Vian4g02460 1293 NCBIfam Niemann-Pick C type protein family 50 1272 IPR004765 GO:0005319|GO:0016020
Vian4g02460 1293 Gene3D Multidrug efflux transporter AcrB transmembrane domain 1079 1276 - -
Vian4g02460 1293 Gene3D Multidrug efflux transporter AcrB transmembrane domain 583 800 - -
Vian4g02460 1293 ProSiteProfiles Sterol-sensing domain (SSD) profile. 631 794 IPR000731 -
Vian4g02460 1293 FunFam Putative Patched sphingolipid transporter 1085 1275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02460 Vian-Chr4 41204741 41227245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02460 41 1291 Miscellaneous Gene Families AT1G42470 72.568 0.0 1841
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02460 K12385 - gmx:100784611 2246.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02460 4 41204741 41227245 Vian4g02460 4 41204741 41227245 ECH