Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02424 ATGGCTTCTATCAAATCATGTCCACGGTTGTGCCACTCCCTCTCACCGTTCCTACCCAGCACTTTCAAGCAACTCTGTTCTTTGGCTTCACTTCCCGAACCTCTTCTCCAACCTTATTCAAACGACACATCCCAAATTCCAAACCTATCCTCCGAGGAAACCACCTTAGCAGACAAACTCCACGCCGCCATCAAAGAACACCACCGCAAACACCCCACACCAAATCCCAATACCCCTCCCCCTGCACCCAATCTTACCATCCCCGACCTCTCCCTCGACTTCTCCGCGCTCTCGGCAGCTCACACACTCTCCCCCGCCGTCGCCCGCCACGTCATCGAGAAATGCGGCGCTGTCCGCCATGGCATCCCCTTCCTCCAATCCCTCGCGTTCTTCAACTGGGCCACCGCCCTTGACGGATTTCCCCCCTCGCCAGAGCCCTACAACGAGATGCTCGACCTCGCCGGAAAGCTGAGACATTTCGACCTCGCGTGGCACGTGATCGACCTCATGAAGACTCGCGGCGTCGAAATCAGCGCTCACACGTTCTCTGCTCTCGTCCGCCGCTATGTGAGGGCCGGATTACCTGCGGAGGCGGTGCACGCTTTTAACCGCATGGAGGACTATGACTGCACTCCCGATAAGGTTGCGTTTTCAATTGTGATTAGTAGCTTGTGTAAAAAAAGAAGGGCAAATGAGGCTCAATCGTTTTTTGAGAGTCTCAAGCATAAGTTTGAGCCTGATGTTTTAGTTTACACTAGTTTGGTTTATGGGTGGTGTCGTGCTGGTAACATATCTAAGGCTGAAGAGGTGTTTAATGATATGAAGATGGCTGGGATTAAACCTAATGTTTATACTTACAGCATTGTGATTGATTCGTTGTGCCGATGTGGGCAAATTACGCGTGCTCATGATGTTTTCGCGGAGATGATTGATGCAGGTTGTGATCCTAATGCTGTTACTTTCAACAGTTTGATGCGGGTTCATGTTAAGGCTGGGAGGACTGAGAAGGTATTGCAGGTTTACAATCAGATGAAGAGGCTAGGTTGTCCTGCAGATACCATTAGCTACAATTTCATCATTGAGAGTCATTGCAGGGATGAGAATCTTGATGAGGCTGTGAAGATTCTCAATTTGATGGTGAAGAAAGGGGTTGCTCCTAATGCGTCCACTTTCAATTGTGTTTTTGGATGCATAGCTAAGTTGCATGATGTGAATGGTGCGCACAGGATGTATGCTAGAATGAAGGAGCTGAAGTGCCAGCCCAATACGTTGACTTATAATATATTGATGAGGATGTTTGCTGAGTCAAGATCTACTGATATGGTTCTGAAAATGAAGAAGGAAATGGACGAGAATCAGGTTGAACCTAATGTAAACACTTACCGGATTTTGATTTCGATGTTTTGTGAAATGAAGCACTGGAACAATGCTTACAAGTTAATGAAGGAAATGGTTGAAGAAAAATGCCTAAGACCCAATCTATCAGTTTATGGAACGGTTCTGGAGCTGCTCAGAAACGCTGGACAGTTGAAAAAGCATGAAGAGTTGGTGGAGAAGATGGTTTCGAGGGGATTCGTCTCTCGCTCTTTGTAG 1593 0.4765 MASIKSCPRLCHSLSPFLPSTFKQLCSLASLPEPLLQPYSNDTSQIPNLSSEETTLADKLHAAIKEHHRKHPTPNPNTPPPAPNLTIPDLSLDFSALSAAHTLSPAVARHVIEKCGAVRHGIPFLQSLAFFNWATALDGFPPSPEPYNEMLDLAGKLRHFDLAWHVIDLMKTRGVEISAHTFSALVRRYVRAGLPAEAVHAFNRMEDYDCTPDKVAFSIVISSLCKKRRANEAQSFFESLKHKFEPDVLVYTSLVYGWCRAGNISKAEEVFNDMKMAGIKPNVYTYSIVIDSLCRCGQITRAHDVFAEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLQVYNQMKRLGCPADTISYNFIIESHCRDENLDEAVKILNLMVKKGVAPNASTFNCVFGCIAKLHDVNGAHRMYARMKELKCQPNTLTYNILMRMFAESRSTDMVLKMKKEMDENQVEPNVNTYRILISMFCEMKHWNNAYKLMKEMVEEKCLRPNLSVYGTVLELLRNAGQLKKHEELVEKMVSRGFVSRSL 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02424 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 422 456 IPR002885 -
Vian4g02424 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 178 212 IPR002885 -
Vian4g02424 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 457 491 IPR002885 -
Vian4g02424 530 Pfam PPR repeat 319 349 IPR002885 -
Vian4g02424 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 387 421 IPR002885 -
Vian4g02424 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 352 386 IPR002885 -
Vian4g02424 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
Vian4g02424 530 Gene3D Tetratricopeptide repeat domain 242 312 IPR011990 GO:0005515
Vian4g02424 530 NCBIfam pentatricopeptide repeat 460 492 IPR002885 -
Vian4g02424 530 NCBIfam pentatricopeptide repeat 390 423 IPR002885 -
Vian4g02424 530 NCBIfam pentatricopeptide repeat 425 458 IPR002885 -
Vian4g02424 530 NCBIfam pentatricopeptide repeat 284 318 IPR002885 -
Vian4g02424 530 NCBIfam pentatricopeptide repeat 354 388 IPR002885 -
Vian4g02424 530 NCBIfam pentatricopeptide repeat 250 283 IPR002885 -
Vian4g02424 530 NCBIfam pentatricopeptide repeat 319 352 IPR002885 -
Vian4g02424 530 NCBIfam pentatricopeptide repeat 147 178 IPR002885 -
Vian4g02424 530 NCBIfam pentatricopeptide repeat 180 213 IPR002885 -
Vian4g02424 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 493 527 IPR002885 -
Vian4g02424 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 317 351 IPR002885 -
Vian4g02424 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
Vian4g02424 530 PANTHER OS03G0856100 PROTEIN 265 525 - -
Vian4g02424 530 Pfam PPR repeat 209 239 IPR002885 -
Vian4g02424 530 Gene3D Tetratricopeptide repeat domain 123 241 IPR011990 GO:0005515
Vian4g02424 530 Gene3D Tetratricopeptide repeat domain 402 529 IPR011990 GO:0005515
Vian4g02424 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 143 177 IPR002885 -
Vian4g02424 530 Pfam PPR repeat family 352 397 IPR002885 -
Vian4g02424 530 Pfam PPR repeat family 246 295 IPR002885 -
Vian4g02424 530 Pfam PPR repeat family 421 469 IPR002885 -
Vian4g02424 530 Gene3D Tetratricopeptide repeat domain 313 401 IPR011990 GO:0005515
Vian4g02424 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 213 243 IPR002885 -
Vian4g02424 530 SUPERFAMILY TPR-like 174 426 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02424 Vian-Chr4 40886374 40887966 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02424 221 526 Glycosyltransferase AT1G05670 19.939 1.12e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02424 - - gmx:100800850 908.672
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02424 4 40886374 40887966 Vian4g02424 4 40886374 40887966 ECH