Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02422 ATGAGAGCGGTGATGAAGGATGAAACTCAAGCTGTGGTGAATGATAATTCTCACAACGGCAAATTCTCACATCTCCTTGCTTCCCAAGATCGTGATTATCTTCTTTCTCCAACTGGGGCTCAGGTGAAGGTCAGTGATCTTGAAGGGAAAGTAGTGGGGCTATTATTTGGTGCGAATTGGTACCCACCATGCCGCGTATTCACCCAAGCCCTAGTTGGAATCTACGAGGAGTTGAAAAGCCGTTTCCCTCAGTTTGAGATTGTGTATGTGTCCTCTGACGAAGACTTGGATGCTTTCAGTAGCTTCTACGGAAACATGCCATGGCTAGCGATACCGTTCTCTGATTTGGAAACGAAGAAATGGTTGACCAGAAAGTATGAGGTGGAAGCCATTCCGTGCTTGATTTTGTTGCAACCAGAGGATAGTAAAGATGAGGGAACAGTTCGCGACGGGGTTGAACTTATTTACCGTTACGGAGCCGAAGCTTACCCGTTCTGTAACGAGAGGTTGGAGCAGCTGCGAAAGGAAGACAAAGTGAAGCGTGAAAACCAGACCCTCCTTAATTTGCTGTCAAACCAGCATAGAGACTATGTTCTGAGTCACACTCACTCTGGCCTTAAACAGGTACCTGTCGCTTCTCTAGTGGGTAAAACAATTGCACTCTACTTCTCCGCCGAGTGGTGCGTGCCATGCGCCAAGTTCACTCCCAAAATGATTTCCGTTTACGAGAAGATTAAGCAGGAGCTAGCGGAGAAGGGAGAGGAAGACTTCGAAGTTGTGCTGGTATCCAGCGACCGTGACAAAGCATCCTTTGAGTCACACTACAGCAGCATGCCTTGGTTAGCTTTGCCTTTCGGTGATTCCGAGATGAAGAACCTCGTTCGACACTTCAACGTGCAAGGGATTCCATGGTTGGTGATCGTAGGTCCTGATGGTAAAACAATAACAGTGCATGGTAGGAGCTTGATAAACTTGTACCAAGAGAACGCGTACCCTTTCACGAACGCCAAAGTGGAGGAACTGGAAAAGAAGCTTGAGGAAGAGGCGAAGGATCTTCCGGCTCTGGTTTATCACGAAGGTCATCGGCATGACCTGAATTTGGTGTCTGATGGGAACGGTGGAGGACCCTTTATCTGCTGTGTGTGCGATGAACAAGGGTCTAGTTGGGCCTACCAGTGTCTCCAATGTGGTTATGAAGTGCACCCCAAATGCGTCAGAACAGTCGACCGTCAGAACACGAGCGCTGGTTCTGGTTTCACCGGAGGCTCAGACTCCGATGGAGATAGAAAATTGAACTTCTCCGGTGTGCGGTTGGAGGAGGCTGTCGATAGCGCAATAGGATCTGCAAAACTAAGACTGGATAGTTGGATCTCTTCCCGCATCAACGGCATTAGTAGAGCACGCGTTCAATCAAGTATCAAATCGGGACTCGTTCATGTTAATGGTCGTGTCGTTGATAAGGCTTCTTTCAACGTCAAAGCTGGGGATCAGATCAAATGCACAATCGCGGAGTTGCAGAAATTGAGGGCTGTGCCAGAAAATATACCTTTGGATATAGTTTATGAAGATGAGCATGTTCTAGTCATAAATAAACCTGCACACATGGTTGTGCATCCAGCTCCTGGAAATACATCGGGGACGCTTGTCAATGGCATTCTTCACCATTTCAATCTTCCAAATGTTGAATTTTCTAAAGACGAATCTCTTTCAGATACAGAAGATTCTGATGACGAGGTTAATAGCTATGGCTCCATGACAAGTTCTTATGAAGGATCACATTCTATATTGTCTATGTCATCAATTCGCCCAGGGATTGTACACAGATTGGACAAAGGCACAAGTGGGTTACTTGTTGTTGCAAAGGATGAGCATTCACATATGAAATTATCCGAGCAATTTAAGCAACGCACCATCAAGAGGGTTTATGTTAGTCTCACTGCTGGGGTACCCACTCCGGTTTCTGGGCGAGTTGAGGTTCCAGTTGGCCGTGATCTTAATAACCGGTTGCGTATGACTGCTGTAGCTGGACCAGCCAATTCTAGAAATGCCCGTCATGCTGCTAGTAGGTACAGAGTAATTGAGATACTTGCTGGGGGAAGTTGTTCATTGGTTGAGTGGAAGTTGGAAACTGGACGCACTCATCAGATCCGTGCTCATGCTAAGTATTTGGGAGTTCCTTTACTCGGTGATGAGGTGTATGGAGGGACAAAAAGCATGGTCTTGTCACTACTAAGGCCCCGAACTCCCATCAGTTTGCATGGAAAAATTGTACAAATGGTTTCTAGGCTAGATAGGCCTTGCCTTCATGCTTTGACACTCGGGTTTCAGCATCCCTATACAGGGGAGCAGGTGCACTTTTCATGTGAACCCCCTGTAGACTTCGATGAGATTTTGAGCCAGCTTCGTAGAATTGGTAGTGAGAATGTTTCTTTCTCAAAGCGTTCAAATTTTTGA 2454 0.4654 MRAVMKDETQAVVNDNSHNGKFSHLLASQDRDYLLSPTGAQVKVSDLEGKVVGLLFGANWYPPCRVFTQALVGIYEELKSRFPQFEIVYVSSDEDLDAFSSFYGNMPWLAIPFSDLETKKWLTRKYEVEAIPCLILLQPEDSKDEGTVRDGVELIYRYGAEAYPFCNERLEQLRKEDKVKRENQTLLNLLSNQHRDYVLSHTHSGLKQVPVASLVGKTIALYFSAEWCVPCAKFTPKMISVYEKIKQELAEKGEEDFEVVLVSSDRDKASFESHYSSMPWLALPFGDSEMKNLVRHFNVQGIPWLVIVGPDGKTITVHGRSLINLYQENAYPFTNAKVEELEKKLEEEAKDLPALVYHEGHRHDLNLVSDGNGGGPFICCVCDEQGSSWAYQCLQCGYEVHPKCVRTVDRQNTSAGSGFTGGSDSDGDRKLNFSGVRLEEAVDSAIGSAKLRLDSWISSRINGISRARVQSSIKSGLVHVNGRVVDKASFNVKAGDQIKCTIAELQKLRAVPENIPLDIVYEDEHVLVINKPAHMVVHPAPGNTSGTLVNGILHHFNLPNVEFSKDESLSDTEDSDDEVNSYGSMTSSYEGSHSILSMSSIRPGIVHRLDKGTSGLLVVAKDEHSHMKLSEQFKQRTIKRVYVSLTAGVPTPVSGRVEVPVGRDLNNRLRMTAVAGPANSRNARHAASRYRVIEILAGGSCSLVEWKLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMVLSLLRPRTPISLHGKIVQMVSRLDRPCLHALTLGFQHPYTGEQVHFSCEPPVDFDEILSQLRRIGSENVSFSKRSNF 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02422 817 Pfam S4 domain 452 498 IPR002942 GO:0003723
Vian4g02422 817 SMART s4_6 451 516 IPR002942 GO:0003723
Vian4g02422 817 ProSiteProfiles Thioredoxin domain profile. 188 350 IPR013766 -
Vian4g02422 817 MobiDBLite consensus disorder prediction 565 590 - -
Vian4g02422 817 Gene3D Glutaredoxin 25 166 - -
Vian4g02422 817 Gene3D Glutaredoxin 195 335 - -
Vian4g02422 817 ProSiteProfiles S4 RNA-binding domain profile. 451 524 - -
Vian4g02422 817 SUPERFAMILY Alpha-L RNA-binding motif 450 538 - -
Vian4g02422 817 SUPERFAMILY Pseudouridine synthase 511 802 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vian4g02422 817 SMART c1_12 361 410 IPR002219 -
Vian4g02422 817 Gene3D Pseudouridine synthase 508 790 - -
Vian4g02422 817 ProSiteProfiles Zinc finger phorbol-ester/DAG-type profile. 360 412 IPR002219 -
Vian4g02422 817 Pfam Thioredoxin-like 49 140 IPR012336 -
Vian4g02422 817 Pfam Thioredoxin-like 216 313 IPR012336 -
Vian4g02422 817 Pfam RNA pseudouridylate synthase 525 720 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vian4g02422 817 CDD C1 379 408 - -
Vian4g02422 817 Pfam C1 domain 360 405 IPR004146 -
Vian4g02422 817 PANTHER THIOREDOXIN 15 388 - -
Vian4g02422 817 SUPERFAMILY Cysteine-rich domain 349 407 IPR046349 -
Vian4g02422 817 CDD S4 452 530 - -
Vian4g02422 817 SUPERFAMILY Thioredoxin-like 197 318 IPR036249 -
Vian4g02422 817 Coils Coil 331 351 - -
Vian4g02422 817 SUPERFAMILY Thioredoxin-like 34 140 IPR036249 -
Vian4g02422 817 ProSiteProfiles Thioredoxin domain profile. 24 175 IPR013766 -
Vian4g02422 817 Gene3D - 439 507 IPR036986 GO:0003723
Vian4g02422 817 ProSitePatterns Rlu family of pseudouridine synthase signature. 606 620 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vian4g02422 817 CDD PseudoU_synth_RluA_like 526 775 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02422 Vian-Chr4 40866434 40876317 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02422 K17609 - gmx:100808125 731.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02422 4 40866434 40876317 Vian4g02422 4 40866434 40876317 ECH