Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02397 ATGGAACAGCTCAAACTATCACTTCAATTTTTACTAACACTTCATCTATTAGCATCAGGTGCAGTATCAACAACAACGTTCACCGTGGTTAACAAATGCGACTACTCGGTGTGGCCAGGCATTCTCTCAAACGCAGGAATCGCGCCGCTTCCAACAACCGGTTTCCTTCTCCAAAATGGTGAGTCCAAAACCGTAACCGCTCCAACCTCTTGGGGTGGCCGTTTATGGGGCCGCACTCTCTGCTCCCAAGACTCCGCCGGAAAATTCTTCTGCCTCACAGGCGATTGTGGCTCCGGCACGATCGAATGTGCGGGCAAGGGCGCCGTGCCGCCGGCGACCTTGGCCGAGTTCACTCTCGACGGCGACGGAGGCCTCGATTTCTTCGACGTGAGCCTCGTGGACGGTTACAACGTGCCGATGCTGGTGGCTCCCCGGGGTGGCTCCGGCGATAACTGCACCAGCACGGGGTGCGTTGGGGACCTCAACGGGGCGTGCCCTTCGGAGCTTAGGGTTACAAGCGTGGATGGAAAACAGAGCGTGGCGTGTAGGAGCGCGTGCGAGGCGTTCGGGTCCCCTCAGTATTGCTGCAAAGGCGCTCAGAAATCGTGGCAGGGGCAAAACCCGAAATCAGATAGCAGCAGTAGTTGTTCTTCTTCTTCTGAGTCGCCGCCAGTTAACAATGGCACAATGGTGTATATGGATGAAAGTGAATTTCCATGGTCAGTAGGTACCCATGTGACTATGAAGGAATCTCAAGCCATTGCTGGTTTTGTCAGTATCACCATTGCTCTCTGGCTCTTGTGCAACTTATAG 813 0.5449 MEQLKLSLQFLLTLHLLASGAVSTTTFTVVNKCDYSVWPGILSNAGIAPLPTTGFLLQNGESKTVTAPTSWGGRLWGRTLCSQDSAGKFFCLTGDCGSGTIECAGKGAVPPATLAEFTLDGDGGLDFFDVSLVDGYNVPMLVAPRGGSGDNCTSTGCVGDLNGACPSELRVTSVDGKQSVACRSACEAFGSPQYCCKGAQKSWQGQNPKSDSSSSCSSSSESPPVNNGTMVYMDESEFPWSVGTHVTMKESQAIAGFVSITIALWLLCNL 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02397 270 ProSiteProfiles Thaumatin family profile. 24 216 IPR001938 -
Vian4g02397 270 MobiDBLite consensus disorder prediction 203 230 - -
Vian4g02397 270 PANTHER OS03G0233200 PROTEIN 17 218 IPR001938 -
Vian4g02397 270 SMART tha2 27 223 IPR001938 -
Vian4g02397 270 FunFam THAUMATIN-LIKE PROTEIN 1 25 225 - -
Vian4g02397 270 Pfam Thaumatin family 31 207 IPR001938 -
Vian4g02397 270 CDD TLP-PA 26 202 - -
Vian4g02397 270 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Vian4g02397 270 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Vian4g02397 270 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Vian4g02397 270 SUPERFAMILY Osmotin, thaumatin-like protein 25 200 IPR037176 -
Vian4g02397 270 Gene3D Thaumatin 25 228 IPR037176 -
Vian4g02397 270 ProSitePatterns Thaumatin family signature. 87 103 IPR017949 -
Vian4g02397 270 MobiDBLite consensus disorder prediction 203 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02397 Vian-Chr4 40652891 40655438 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02397 1 198 Receptor kinase-like Gene Family AT5G38280 54.000 5.10e-71 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02397 - - gmx:100780102 351.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02397 4 40652891 40655438 Vian4g02397 4 40652891 40655438 ECH