Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02372 ATGGCTACACATTACCTTCTTCTTCTACCTACCATCTTCTTCCACCTTCTTCTGCTGTTCTCCCTTACCCTTCCCTTCCCCTCCCAAGCTACCAATGCCCAATGGCAGATACTCCAAAAATCCATAGGCATCGTCGCTATGCACATGCAGCTCCTCAACAATGACCGTGTCATCATCTTCGACCGCACTGACTTCGGCTTTTCCAACCTCACTCTCCCCAACGGCGTCTGTCGCCACGATCACTCAGAAATGGTTACCAAAACAGACTGCACCGCTCACTCCATCGAATACGACGTCGCATCCAACACCTTCCGCGCCCTCTTCGTCCAAACAGACGTCTGGTGCTCCTCCGCCAGCGCCGTCGCCGACGGTAGCCTCATCCAAACCGGCGGGTACAACGACGGCGAACGCAAAATAAGGTCCTTCACTCCATGCGAAACAGGTGAGGACTGTGAGTGGCAAGAAACCAACAACGCCCTCGCAGTAAGAAGATGGTACTCCACCAATCACTATTTGCCAGATGGACGACAAATTATAATCGGAGGGAGAAGACAATTCAACTACGAGTTTCATCCTAAGCGAAAAACAGAAGAGAATAACAAACCCTACGAGTTACCGTTTTTGCTTCAGACTCATGATAAGGGTGGGGAAAATAATCTTTATCCGTTTGTTGTTTTAAACGTGGACGGAAATCTTTTTATTTTCGCCAACAACCGTGCGATTTTGTTTGATTACCAGAACGACGTCGTTGTGAGAACGTACCCCGAGATACCCGGGGGAGACCCTAGGTGTTATCCTAGTACCGGTTCAGCGGTGTTGCTACCACTGAAGAATTTGGAAGCGGCGAGGGTGGAAGCTGAGGTTTTGGTCTGCGGTGGGGCCCGCAGAGGGGCTTTTCAGCTTGTGTCCAAGGGTGTTTTCTCCAAAGCGATGGATTCTTGCGCGCGGATTAAGATCACGGATCCCAATGCCACGTGGGTGGTGGAGACCATGCCAATGGGGCGGGTGATGAATGACATGGTCATGCTCCCCAACCGCGACGTTTTGATCATAAACGGAGCTCAATCTGGAACAGCGGGGTGGGGGAATGCAGAGAATCCGGCTCTTCAACCGGTTATTTATAGAACCAACGGTTCGGGTGGGTCGCGGTTCGTGTTGCAACCCGCTTCGGATATTCCGAGGATGTATCATTCGACGGCCGTTCTGGTTCGTGATGGAAGAGTGATCGTAGGTGGGAGCAATCCTCACGAGAAATACGTGTTCTCTAATGTGTCATATCCTACGGAGTTGAGTTTGGAAGCTTTTTCTCCTTACTATCTGGACTCTCAGTTTGGGGCTGTACGTCCCATTATTGTAGAGCCTTGTTCTTACGTGAAGTTGATGTATGGCGAGAAATTGAAGATGAGTATTAAGGTGAATGGAACCCTGGTGCCTGAGTTATTGTCCGTGTCGATGTTAGCGCCGCCTTTTAACACGCACTCTTTTTCCATGAGTCAGAGGTTGTTGGTGTTGTCGATGGGTGAAGTTAAGGTGAGAGGAAATTCAAGTTGTGAATTTGAGGTGACGGCGCCAGGTTCAGCTGTTCTTGCACCACCCACGTTTTATATGCTATTTGTGGTTCATGGAGACATTCCCAGCGAGGGAATTTGGATCCAGATGCAATGA 1665 0.4985 MATHYLLLLPTIFFHLLLLFSLTLPFPSQATNAQWQILQKSIGIVAMHMQLLNNDRVIIFDRTDFGFSNLTLPNGVCRHDHSEMVTKTDCTAHSIEYDVASNTFRALFVQTDVWCSSASAVADGSLIQTGGYNDGERKIRSFTPCETGEDCEWQETNNALAVRRWYSTNHYLPDGRQIIIGGRRQFNYEFHPKRKTEENNKPYELPFLLQTHDKGGENNLYPFVVLNVDGNLFIFANNRAILFDYQNDVVVRTYPEIPGGDPRCYPSTGSAVLLPLKNLEAARVEAEVLVCGGARRGAFQLVSKGVFSKAMDSCARIKITDPNATWVVETMPMGRVMNDMVMLPNRDVLIINGAQSGTAGWGNAENPALQPVIYRTNGSGGSRFVLQPASDIPRMYHSTAVLVRDGRVIVGGSNPHEKYVFSNVSYPTELSLEAFSPYYLDSQFGAVRPIIVEPCSYVKLMYGEKLKMSIKVNGTLVPELLSVSMLAPPFNTHSFSMSQRLLVLSMGEVKVRGNSSCEFEVTAPGSAVLAPPTFYMLFVVHGDIPSEGIWIQMQ 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02372 554 Pfam Galactose oxidase-like, Early set domain 448 552 IPR015202 -
Vian4g02372 554 Pfam Glyoxal oxidase N-terminus 47 293 IPR009880 -
Vian4g02372 554 CDD E_set_GO_C 444 553 IPR015202 -
Vian4g02372 554 PANTHER SECRETED PROTEIN-RELATED 18 553 - -
Vian4g02372 554 Gene3D - 29 446 IPR037293 -
Vian4g02372 554 Gene3D Immunoglobulins 447 554 IPR013783 -
Vian4g02372 554 SUPERFAMILY Galactose oxidase, central domain 94 441 IPR011043 -
Vian4g02372 554 SUPERFAMILY E set domains 444 553 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02372 Vian-Chr4 40422022 40423686 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02372 - - gmx:100799954 847.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02372 4 40422022 40423686 Vian4g02372 4 40422022 40423686 ECH