Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02370 ATGAGTAGAAGACCACCTCCTGATCCCGTGGCAGTGCTAAGAGGCCATCGAGCTTCGGTCACAGACATTTCTTTTCATCCCTTTAAGCCGATATTATTCTCCGGTTCTGCTGATGGTGAAGTCCGAATTTGGGATACCCTTCAACATCGAACTGTGTCATCTGCATGGTTACATAGTGCTGCACATGGTATTGTTGCTGTTGCTTGTGCTTCTTCCCTCGGAACCAATAAATTTGCCAGCCAGGGTAGGGATGGAACTGTAAAAGTTTGGGAATTTGATGATGCCGGTTTGTCAAGGATCCCATCACTTACAATCAAGACAAACAGTTACCACTTTTGCAAATTTTCCGTGATGAAGAATGATTCTGTTGGGTCAACAGAAGGGAAAGAATTAGAAGATTGCAACAGAAGAGACCCAGGAGGAATGTCTGATAGAGAAATTCTGGAGGTTAAAAGGGACGAGGCTTACACCAATCAAAGTTGTTCTAAAAGCTTTGGAGAAAATACATATAGTGGAGGGCTACAATATGTGGCTTTGTCAGGGGAGAACTCTTCAGAGGTCGAAATTTGGGATCTCAAGTCAGCTCAAAAAATTGTACAACTCCCTTCAAGCAATCCCAGTAACCCTTCAAGTGTTAGCAACAGAGTACTTTCACTGAATCATCACAGCTGCTTCTTGTCAGGGATGTGCATGGCACTTCAATTGTTTTTATCATCGGAATCACAAGGATTTTTAAATGTCTTGGCTGGATATGAAGATGGTTCCATGCTTTGGTGGGATATACGGAATCCTAAAGTTCCAGTAACTTCTGTAAAATTTCATTCTGAGCCAGTTCTGAGCATCTGTATTGACGGGTCTTGCAAAGCGGGTATCTCGGGAGCAGCGGATGACAAAATTATAATGTACAGCCTGGATCATTCTTCGGGTACTTGTGTAGTTAAGAAAGAAATCAGTTTGGAACGACCAGGCATATCAGGCATCTCAATTCGACCTGATGGAAAAATTGCTGCAACTGCTGGCTGGGATCACAGGGTGAGGATATATAATTACCGCAAGGGAAATGCTTTAGCTATTTTGAAGTATCACCATGGCACATGCAACGCTGTAACTTATTCCTCTGATTGTAAACTTATGGCCTCTGCATCGGAAGACACAACCGTGGGGCTATGGGAATTGTATCCTCCTCGAATATGA 1194 0.4313 MSRRPPPDPVAVLRGHRASVTDISFHPFKPILFSGSADGEVRIWDTLQHRTVSSAWLHSAAHGIVAVACASSLGTNKFASQGRDGTVKVWEFDDAGLSRIPSLTIKTNSYHFCKFSVMKNDSVGSTEGKELEDCNRRDPGGMSDREILEVKRDEAYTNQSCSKSFGENTYSGGLQYVALSGENSSEVEIWDLKSAQKIVQLPSSNPSNPSSVSNRVLSLNHHSCFLSGMCMALQLFLSSESQGFLNVLAGYEDGSMLWWDIRNPKVPVTSVKFHSEPVLSICIDGSCKAGISGAADDKIIMYSLDHSSGTCVVKKEISLERPGISGISIRPDGKIAATAGWDHRVRIYNYRKGNALAILKYHHGTCNAVTYSSDCKLMASASEDTTVGLWELYPPRI 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02370 397 PANTHER TRANSDUCIN BETA-LIKE 3 4 392 - -
Vian4g02370 397 PRINTS G protein beta WD-40 repeat signature 78 92 IPR020472 -
Vian4g02370 397 PRINTS G protein beta WD-40 repeat signature 32 46 IPR020472 -
Vian4g02370 397 PRINTS G protein beta WD-40 repeat signature 378 392 IPR020472 -
Vian4g02370 397 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 359 397 - -
Vian4g02370 397 ProSiteProfiles Trp-Asp (WD) repeats profile. 359 397 IPR001680 GO:0005515
Vian4g02370 397 Gene3D - 2 96 IPR015943 GO:0005515
Vian4g02370 397 Gene3D - 101 396 IPR015943 GO:0005515
Vian4g02370 397 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 13 45 - -
Vian4g02370 397 ProSiteProfiles Trp-Asp (WD) repeats profile. 13 54 IPR001680 GO:0005515
Vian4g02370 397 SUPERFAMILY WD40 repeat-like 4 391 IPR036322 GO:0005515
Vian4g02370 397 Pfam WD domain, G-beta repeat 324 349 IPR001680 GO:0005515
Vian4g02370 397 Pfam WD domain, G-beta repeat 356 390 IPR001680 GO:0005515
Vian4g02370 397 Pfam WD domain, G-beta repeat 9 45 IPR001680 GO:0005515
Vian4g02370 397 ProSitePatterns Trp-Asp (WD) repeats signature. 378 392 IPR019775 -
Vian4g02370 397 SMART WD40_4 48 91 IPR001680 GO:0005515
Vian4g02370 397 SMART WD40_4 352 391 IPR001680 GO:0005515
Vian4g02370 397 SMART WD40_4 264 303 IPR001680 GO:0005515
Vian4g02370 397 SMART WD40_4 6 45 IPR001680 GO:0005515
Vian4g02370 397 SMART WD40_4 310 349 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02370 Vian-Chr4 40394475 40400159 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02370 214 392 Miscellaneous Gene Families AT5G08390 24.022 1.12e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02370 K24770 - gmx:100800482 662.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02370 4 40394475 40400159 Vian4g02370 4 40394475 40400159 ECH