Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02348 ATGTGGGAGGATCTAATTAGGAAGGCCAAACATGGAGGCCTTGATGTCATAGACACTTATGTCTTCTGGGATGTCCATGAACCATCTCCTGGCAATTATAATTTTGAAGGAAGGTATGATCTAGTACGGTTTATTAAGACGGTGCAGAAGGTGGGGCTTTATGCCAACCTTCGAATTGGACCTTACGTGTGCGCTGAGTGGAACTTTGGAGGAATTCCTGTATGGTTGAAGTATGTTCCTGGTGTGAGCTTCAGAACGGATAATGAGCCTTTCAAGGCAGCAATGCAAGGTTTCACGCAGAAAATTGTCCAGATGATGAAGACTGAGAAGTTGTTTCAGTCTCAGAACGGTCCAATAATTCTCTCTCAGATTGAGAATGAGTACGGACCAGAGAGCAGGGCAATGGGAGCTGCTGGTCGTGCGTACTTAAACTGGGCTGCAAGCATGGCTGTTGGATTGGGTACGGGAGTGCCCTGGGTGATGTGCAAGCAAAATGATGCCCCAGATCCCGTGATCAATTCATGTAATGGTTTTTACTGTGATGATTTCGCTCCAAATAAACCATACAAGCCTAGCATGTGGACTGAGTCTTGGAGTGGCTGGTTTACAGATTTTGGTGGCCCAATTCACCAGCGACCAGTTCAGGATCTATCATTTGCAGTTGCTCGTTTCATTCAAAAGGGTGGCTCATATGTGAATTATTACATGTATCATGGAGGAACTAACTTTGGACGATCAGCTGGAGGCCCATTCATTACTACAAGCTATGACTATGACGCTCCAATTGATGAATATGGTTTGATCAGGCAACCAAAATACAGTCATTTGAAGGAGCTTCATAGAGCTATCAAGCGGTGTGAACATGCTTTGGTTTCTTCGGATCCCACTGTTGCGTCCTTAGGAAATCAACAGCAGGCTCATGTATACTCTTCAGGTACTGGAACATGTGCAGCTTTTCTAGCAAACTATAATGCAAACTCTGCTGCTACGGTGACATTCAATAACAGGAAGTATGATTTGCCCCCTTGGTCCATAAGCATCCTTCCTGATTGCAAAACTGATGTATTTAATACTGCAAAAGTGAGAGTTCAAACTTCAGAGGTAAAAATGCTTCCTGTCAGTACTAAGTTGTTCTCATGGGAGAGCTATGATGAAGATATATCTTCTCTGGCTGAGAGTTCAAGGATTACATCTCCTGGACTCTTAGAACAACTCAACGTTACCAGGGACACCAGTGACTACCTATGGTACATAACCAGCATTGACATAAGTTCATCAGAAACCTTTCTTCGAGATGGAAAAAAACCCAGCATTAATGTGCAGTCATCTGGAGACGCTGTTCATGTGTTCGTTAATGGGCAATTTTCAGGGTCGGCTTTTGGAACAAGGGAGCAGAGAAGTTTCACATTCAATGGACCTATAGATCTCCACGCTGGAACAAATAAAATTGCTCTTCTCAGCGTGACTGTTGGATTACCTAACGTTGGTCGGCATTATGAAACATGGGAGACAGGGATCACTGGTCCAGTCTTGCTACACGGTCTTGACCAGGGACAGAAAGATTTAACATGGAATAAGTGGTCGTACAAGGTTGGCCTAAGAGGAGAGGATATGGATTTGGCGTCTCCCAATGGGGTGTCGTCTGTTGATTGGGTCCAAGAATCACAAGGTACACAAAGTCGGTCGCAATTGAAATGGTACAAGGCTTATTTTGATGCACCTGGTGGAAAGGAACCACTGGCTTTGGACCTAGAAAGCATGGGTAAGGGTCAAGTATGGATAAACAGACAGAGCATAGGGAGATATTGGTTGGCCTATGCAAAGGGTGATTGTAATTCTTGCACCTATTCTGGAGGCTTTCGCCCTGTAAAATGCCAACTTGGTTGTGGCCAACCCACTCAACGATGGTATCACGTTCCAAGGTCCTGGCTAAAGCCAACGAAGAACTTGATCGTAGTGTTTGAAGAATTAGGCGGAAATCCTTGGAAAATATCTTTGGTTAAGAGAATGGTACATACTTCGGCAGGTCATGAATAA 2037 0.4433 MWEDLIRKAKHGGLDVIDTYVFWDVHEPSPGNYNFEGRYDLVRFIKTVQKVGLYANLRIGPYVCAEWNFGGIPVWLKYVPGVSFRTDNEPFKAAMQGFTQKIVQMMKTEKLFQSQNGPIILSQIENEYGPESRAMGAAGRAYLNWAASMAVGLGTGVPWVMCKQNDAPDPVINSCNGFYCDDFAPNKPYKPSMWTESWSGWFTDFGGPIHQRPVQDLSFAVARFIQKGGSYVNYYMYHGGTNFGRSAGGPFITTSYDYDAPIDEYGLIRQPKYSHLKELHRAIKRCEHALVSSDPTVASLGNQQQAHVYSSGTGTCAAFLANYNANSAATVTFNNRKYDLPPWSISILPDCKTDVFNTAKVRVQTSEVKMLPVSTKLFSWESYDEDISSLAESSRITSPGLLEQLNVTRDTSDYLWYITSIDISSSETFLRDGKKPSINVQSSGDAVHVFVNGQFSGSAFGTREQRSFTFNGPIDLHAGTNKIALLSVTVGLPNVGRHYETWETGITGPVLLHGLDQGQKDLTWNKWSYKVGLRGEDMDLASPNGVSSVDWVQESQGTQSRSQLKWYKAYFDAPGGKEPLALDLESMGKGQVWINRQSIGRYWLAYAKGDCNSCTYSGGFRPVKCQLGCGQPTQRWYHVPRSWLKPTKNLIVVFEELGGNPWKISLVKRMVHTSAGHE 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02348 678 Gene3D - 382 529 - -
Vian4g02348 678 FunFam Beta-galactosidase 389 526 - -
Vian4g02348 678 Gene3D Glycosidases 1 286 - -
Vian4g02348 678 Pfam Glycosyl hydrolases family 35 1 282 IPR031330 -
Vian4g02348 678 FunFam Beta-galactosidase 534 675 - -
Vian4g02348 678 Gene3D - 538 675 - -
Vian4g02348 678 SUPERFAMILY (Trans)glycosidases 1 286 IPR017853 -
Vian4g02348 678 Pfam Beta-sandwich domain in beta galactosidase 290 361 IPR041392 -
Vian4g02348 678 FunFam Beta-galactosidase 235 363 - -
Vian4g02348 678 PRINTS Glycosyl hydrolase family 35 signature 2 20 IPR001944 GO:0004553|GO:0005975
Vian4g02348 678 PRINTS Glycosyl hydrolase family 35 signature 589 605 IPR001944 GO:0004553|GO:0005975
Vian4g02348 678 PRINTS Glycosyl hydrolase family 35 signature 250 266 IPR001944 GO:0004553|GO:0005975
Vian4g02348 678 PRINTS Glycosyl hydrolase family 35 signature 57 76 IPR001944 GO:0004553|GO:0005975
Vian4g02348 678 PRINTS Glycosyl hydrolase family 35 signature 562 576 IPR001944 GO:0004553|GO:0005975
Vian4g02348 678 PRINTS Glycosyl hydrolase family 35 signature 114 129 IPR001944 GO:0004553|GO:0005975
Vian4g02348 678 PRINTS Glycosyl hydrolase family 35 signature 193 208 IPR001944 GO:0004553|GO:0005975
Vian4g02348 678 PRINTS Glycosyl hydrolase family 35 signature 230 245 IPR001944 GO:0004553|GO:0005975
Vian4g02348 678 SUPERFAMILY Galactose-binding domain-like 345 516 IPR008979 -
Vian4g02348 678 PANTHER BETA-GALACTOSIDASE RELATED 2 672 IPR001944 GO:0004553|GO:0005975
Vian4g02348 678 FunFam Beta-galactosidase 1 286 - -
Vian4g02348 678 SUPERFAMILY Galactose-binding domain-like 524 673 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02348 Vian-Chr4 40188414 40192848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02348 1 671 Glycoside Hydrolase AT4G36360 71.684 0.0 1065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02348 - - gmx:100795144 1318.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02348 4 40188414 40192848 Vian4g02348 4 40188414 40192848 ECH