Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02316 ATGCTGGTGGAACTGCATTTCCATTCCAATTTCGAACTTGTTGTTGCATTCGCGTTTGCGCCTCAAACGCTAACTCTTCAGTGCCCGCGGCATCTGATTCCCTCCCATTCGCTCTCTCCACCATGTCCACGCCTATTTAATCCCTGCACGATGCGAATTCCCGAGGGGCGCCTCACCTTTTCTCTCTCCAATCTCTCTCCTCGACTCGCACCTCTTTTGTCTCCTCGCCTTCGCTTCTTTTCTGGAATCTGCGCCAAACGCCCTCACTCCGTCGCCAACGCCACGTCACCAGGAGTTAATCCGTTGCATGCTCAATATTCAATGGACGGCAACCATGAAATTGGTGTACATGATTCAGGATTGGTGGGTTCGCCTGGCAGTGATGGCAGAAAACAGCCACGTGTATGGTCATCTCCCGAACATGGATTTAAAACTGAAATAAGCAAGCAGATATTCTGTAATCGATCACTGAATATGAAGAACATCGTTGCTGTGGGATTTGACATGGATTATACTCTGGCACAGTACAAGCCTGAAACTTTTGAATCTCTTGCTTATCAAGGCACAATTAAAAAGCTGGTTTATGATTTGGGATACCCTCGTGAGTTACTAAATTGGTGTTTTAACTGGAAGTACATGGTCAGAGGCTTGGTTCTTGACAAAAAAAGAGGAAACATATTGAAGATGGATCGCCACAAGTATGTGAAAGTAGCCTATCACGGATTTAGAGAGTTGTCAAAAGAAGATAAAGTTGGAACCTATGGAAATACTTTAATACGTGATTCCTTTGATGAACCGGATTATGCTCTAATTGATACTCTCTTTTCACTTGCGGAGGCCTACTTGTTTGCTCAATTGGTTGATTTCAAGGATTGTAATCCCGGCAAGATTCAAGAGGGTGTTGACTATGCTCGCATGTACAAAGATGTTCGAGCTGCAGTTGATTTGTGTCACCGTGATGGAACATTGAAGCAAATGGTTGCTAAAGAACCAAAAAGGTATATTAATGAAGACTCCTCAATAGTGCCCATGCTTGAAATGCTCAGAGACTCTGGTCGTGCAACATTTTTAGTGACAAATAGTTTATGGGACTATACAAACATTGTCATGAATTTCCTCTGTGGATCCAGCATGGAAGATGTCAGTAACAATTTTTTCTGGCTTCAATACTTTGATGTTGTAATCACTGGCAGTGCAAAGCCGGGTTTTTTTCATGAGGAAAATCGTGCCAACCTATTTGAGGTTGTGCCTGAGACGGGAATGCTTCTCAATACAGATAATGGCTCTCCCATGCCCCAGGTGGGTAATACCTCAGCAAGGTTGTTCACAGAAGCAAAGAATCATGCCTGTCCAGTTTTCCAGGGAGGCAATGTTGCTCATCTTCATAAACTGCTTTCCATTGAATCTAGTTCTCAGGTTCTCTACGTTGGGGATCATATTTATGGAGATATATTACGCAGCAAAAAGAAACCTATCAATTTGGTCCGACCTGCCGGATCCAAATTCTGTGGACGCGGAGGTGAAGAGATGGAGACGACAACAGGAGCAAGATTAGAAGCGATTGAGATAACAGTGGAGGGAATGAAGGCGGAGTCGACGGCAGTACGTCGCGATTTACAACAAATTATGAAGATGCTGGAAAAACAGGGAAATCACGCGGAGAGTAATTCGGAGGATAGCTCCGTGAATGATAACCGACACAGAGGGAATGAGGAGACCAGAGGCGGTGGAAGCGGCAAACGAAGTGGAGCACAAAAGCCTTGGAGGAAAAGGGTTGAGTTACCCACCTTTGACGGGGACGAGCCGCTCAGTTGGCTCAATTGGGCAAAAAGGTTTTTCGATATACAAAGGGTGACGGACGATGAAGAAAAGGTGGAGGTCGCCTACGTAAGCATGGAGGGCAGCGCGGCGTACTGGTTCACTTTCTGGAAAGAGAAAGCGAGAAACCGAACGTGGAACGGGTTGAAGGAAGCCATGGTTAATCGTTTTGGTGGTGGATTCAGGGGGACCGTGTTCGAGCGACTGGCTACTCTGTGTCAGGAAGGAACAGTCGAGGAATTCGTACGTCAGTTTGAAGTATTGATGGGGCAAACGACGGGGATTCCAGAGGAACAGGTGATGGGCTATTTCTTAGCTGGTTTGCGGGAGGACGTGAAGGGTCAAGTGCGGATCCAGAACCCATTGGCGTTGATGGAGGCGATGAGGATTGCGCGTGATGTAGAAGATGCGATGATGAAAGCGCAGGGAAGCCAGGCTAGTGGACTCAAGACGAACCCATTCGGTGCGCGATCAATGGGTGTCGTGACGCGATCGGAATCGGCGAAACAAGCGACGAACCCGTTTGGAAGAACAGAGGGAGGGGGGAACAGATGCCGGGATCATACGCCACAGTACGAGTCCGTTTTCCAGCCCGCTCATCCTCGTGAAGAAGAAGGATGGGAGTTGGCGCTTTTGTGTGGATTACAGAGCTCTGAACAAGGCTACTGTATCGGACATATTTCCTATTCCGGTGATAGAGGAGCTACTGGACGAATTAAGAGGGGCCAAGTACTTTTCAAAGATCGATTTGAAATCTGGGTACCACCAGATCAGGATGGAGGAGGAGGATGTGGCCAAGACCGCCTGGGACATTTCGAATTTCTCGTGATGCCGTTCGGACTTACGAATGCGCCGACCACTTTTCAGAGTACAATGAAGCAGCTGTTACAACCGTATATTAGGAAATGGGTGCTGGTGTTTTTCGACGATATTCTCGTCTATAGTCCAAACTGGGTAGACCATTTGAAGCAGCTGGGTGTGGTGATGCAGCGGCTGGAACGCAATGGGTGGGTGGCCAACAGGAAAAAGTGTGATTTTGGAAGACGGAAGATATGTTACTTGGGCCATCAAATTTCTGAACAAGGGGTGGAAATGGACGGTGATAAAATTAGAGCGGTAGTTGAATGGGAAGAACCCAGAAACTTAAAAGCGTTGAGAGGGTTCCTGGGGCTCACCGGTTACTATCGGAGGTTCGTAGCGGGCTATGGCAAAATAGCAAAACCATTGACAGAAATACTCAAAAAGGGGAGATTCACGTGGAATGAGCAGGCGAAGCAAGCTATGGATGCATTAAAGGCAGCTATCACGTCAGGGCCCGTGTTGGAGTTACCCGATTTCAACCAGGAGTTCCATATTGAATGTGATGCCTCAGGAGGAGGAATAGGTGCTGTGCTGACCCAAAACAGGAGACCCATCGCCTTCTACACTAAGGCCTTGTCGGAGAACACCTTAAGTAAATCAATCTACGAGAAGGAGTTAATGGCTTTGGTATTAGCCATCCAACACTGGAGACCGTACTTGGTAGGAAGAAAATTTACGGTGCACACAGACCAGCGTAGCTTGAAATATTTGTTAGAGCAGCGGATTACTACCCAGAGTCAGCAAAACTGGTTAGCGAAGTTGATGGGTTATGAATTCGAGATTGTGTATAGGAAAGGTAGTATGAACCAGGCTGCTGACGCGCTTTCGAGGAAACATGAAGGAGAACGGGAAGAAAGGGAGTTGCAAGCTATCTCTAAGCCATTTTGGCCAGACTTCCAAGAGATCTTGAAGGAGGTAGAGGAGGATTCAGAGTTACAGAAGGTGATCGCTGGTCTGAAACATGATTCCAACTCGCATGGGGCGTACACTTTAGAGAACGAAAGGCTGCATTATAAAGGTCGACTGGTAATATCTGCAAACTCAACTTGGATTCCCAAGTTACTGGATGAATTTCATGTGACAAAGACCGGGGGGCATTCGGGAGTCTACAGAACTTATAGAAGGATAGCCCAATCTTTGTATTGGGTGGGTATGAAGAAGGAAATTACAGAATTTGTAGCCAGTTGTACAGTGTGCCAACAACACAAATATGTAACAGCATCCCCTCAGGGCTTGTTACAGCCTTTACCAATTCCTCAGGCAGTGTGGGAAGAAATTAGCCTAGACTTCATAGTGAGACTACCTAAGTCGCAAGGATATGATGCTATTATGGTGGTTGTTGATCGGCTGAGTAAATATGCTCATTTTTTGGCATTAAAACACCCGTATTCTGCAAAGACAGTCGGAGATGTATTTGCTAAGGAGGTAATAAGGTTGCACGGGATCCCAGTGTCGGTGGTGAGTGACAAAGATCCCTTATTCTTGAGCATTTTTTGGAGAGAGCTGTTTAAAATGCAAGGGACTAAGCTCAAAATGAGCACATCTTACCATCCGGAAACGGATGGGCAAACGGAGGTTGTGAACCGCATAGTTGAAGAATTTTGGTACAACACAAGCTACCAAGGGGCAGCAAGATGCACACCATTTGAGACCGTATATGGAAGGCCCCCTCCCTCTTTCAGTCGGTTTATTCCAGGAGAAACACAGGTTGAAGCTGTAGCACAAGATCTCATGTCGAGGGATGAGGCCCTGAAGCAGTTGAAATATCATCTAAGCCGTGCCCAGGATTTGATGACACACCAAGCTAATAAAAAGAGAAGAGAGGTGGATATAAAAGTGGGGGATTGGGTATATCTGAAGATAAGGCCACACAGACAGTCGTCCATGCCGGTGCGATTACATCCAAAGTTGTCAGCTAGATATTTTGGGCCATTCAAAGTATTACAGCAGGTTGGCAATGTGGCTTTCAGGCTAGAGCTTCCTGAAGCAGCGCGAATTCATTTGGTGTTCCATGCTTCTCAATTAAAAAAAGCGGTGGGAGATCAAATAGTGGAAAAAGGTTTACCCGAGGAGTTGCAGGCAGCGGGACCTGCTTTTTGGCCAACAAAGATACTGGAGCACAGACAAATACAGCAAGGAGATGAGGTGTGTCGACAGGTGTTGGTAGAGTGGCAGACCGGGGGTGTAGAAGGGGCGACGTGGGAAGATTTAGCAACAATCAAGGACCAATTTCCGGAGTTCAACCTTGAGGACAAGGTTGAAAATGGAGGGGAGGGATGGAGAACAATGCTTGTAGTCCCAGAACTTGAGAAGGAAGTTAAACTTCTCTGGGAATCTAGGGATACCCGCAAGGAACTTCAATTCTTGAGGAGTGAGCGTGACCGCATCGAGGATGAAATACATCATTTGAAGTGGTCTCTCAAATTCAAGAATCCAGATGCTGATTCCAAGCAGAAGTTATCTTCAGAACTTGATACGTTGGAGCTTGAGAGAGAGAGAGTGAGATTAAGGCATCAAGAAGCTCAAAGAAAATTACATCAAAGGTTTCACGAGCCATGGGGTCAGCTTATGAAAACTGGTTATCAGAATTCTCGCTTTGCTCATCAGGTTGAGAGATTTGCTTGCCTGTATACTAGCCAAGTATCTAACCTGGGCTTGTACTCTCCAGACAAGTATTACAGACCTAGTGAAGATTTCATGCAGCATGAATTTGGCATTGTGGCTTATGAGTCACCAGACACTTAA 5424 0.4635 MLVELHFHSNFELVVAFAFAPQTLTLQCPRHLIPSHSLSPPCPRLFNPCTMRIPEGRLTFSLSNLSPRLAPLLSPRLRFFSGICAKRPHSVANATSPGVNPLHAQYSMDGNHEIGVHDSGLVGSPGSDGRKQPRVWSSPEHGFKTEISKQIFCNRSLNMKNIVAVGFDMDYTLAQYKPETFESLAYQGTIKKLVYDLGYPRELLNWCFNWKYMVRGLVLDKKRGNILKMDRHKYVKVAYHGFRELSKEDKVGTYGNTLIRDSFDEPDYALIDTLFSLAEAYLFAQLVDFKDCNPGKIQEGVDYARMYKDVRAAVDLCHRDGTLKQMVAKEPKRYINEDSSIVPMLEMLRDSGRATFLVTNSLWDYTNIVMNFLCGSSMEDVSNNFFWLQYFDVVITGSAKPGFFHEENRANLFEVVPETGMLLNTDNGSPMPQVGNTSARLFTEAKNHACPVFQGGNVAHLHKLLSIESSSQVLYVGDHIYGDILRSKKKPINLVRPAGSKFCGRGGEEMETTTGARLEAIEITVEGMKAESTAVRRDLQQIMKMLEKQGNHAESNSEDSSVNDNRHRGNEETRGGGSGKRSGAQKPWRKRVELPTFDGDEPLSWLNWAKRFFDIQRVTDDEEKVEVAYVSMEGSAAYWFTFWKEKARNRTWNGLKEAMVNRFGGGFRGTVFERLATLCQEGTVEEFVRQFEVLMGQTTGIPEEQVMGYFLAGLREDVKGQVRIQNPLALMEAMRIARDVEDAMMKAQGSQASGLKTNPFGARSMGVVTRSESAKQATNPFGRTEGGGNRCRDHTPQYESVFQPAHPREEEGWELALLCGLQSSEQGYCIGHISYSGDRGATGRIKRGQVLFKDRFEIWVPPDQDGGGGCGQDRLGHFEFLVMPFGLTNAPTTFQSTMKQLLQPYIRKWVLVFFDDILVYSPNWVDHLKQLGVVMQRLERNGWVANRKKCDFGRRKICYLGHQISEQGVEMDGDKIRAVVEWEEPRNLKALRGFLGLTGYYRRFVAGYGKIAKPLTEILKKGRFTWNEQAKQAMDALKAAITSGPVLELPDFNQEFHIECDASGGGIGAVLTQNRRPIAFYTKALSENTLSKSIYEKELMALVLAIQHWRPYLVGRKFTVHTDQRSLKYLLEQRITTQSQQNWLAKLMGYEFEIVYRKGSMNQAADALSRKHEGEREERELQAISKPFWPDFQEILKEVEEDSELQKVIAGLKHDSNSHGAYTLENERLHYKGRLVISANSTWIPKLLDEFHVTKTGGHSGVYRTYRRIAQSLYWVGMKKEITEFVASCTVCQQHKYVTASPQGLLQPLPIPQAVWEEISLDFIVRLPKSQGYDAIMVVVDRLSKYAHFLALKHPYSAKTVGDVFAKEVIRLHGIPVSVVSDKDPLFLSIFWRELFKMQGTKLKMSTSYHPETDGQTEVVNRIVEEFWYNTSYQGAARCTPFETVYGRPPPSFSRFIPGETQVEAVAQDLMSRDEALKQLKYHLSRAQDLMTHQANKKRREVDIKVGDWVYLKIRPHRQSSMPVRLHPKLSARYFGPFKVLQQVGNVAFRLELPEAARIHLVFHASQLKKAVGDQIVEKGLPEELQAAGPAFWPTKILEHRQIQQGDEVCRQVLVEWQTGGVEGATWEDLATIKDQFPEFNLEDKVENGGEGWRTMLVVPELEKEVKLLWESRDTRKELQFLRSERDRIEDEIHHLKWSLKFKNPDADSKQKLSSELDTLELERERVRLRHQEAQRKLHQRFHEPWGQLMKTGYQNSRFAHQVERFACLYTSQVSNLGLYSPDKYYRPSEDFMQHEFGIVAYESPDT 1807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02316 1807 CDD HAD_cN-II 152 490 - -
Vian4g02316 1807 MobiDBLite consensus disorder prediction 769 790 - -
Vian4g02316 1807 Pfam Ty3 transposon capsid-like protein 613 741 IPR045358 -
Vian4g02316 1807 Gene3D - 873 963 IPR043128 -
Vian4g02316 1807 PANTHER 5'-NUCLEOTIDASE DOMAIN-CONTAINING 147 490 IPR008380 -
Vian4g02316 1807 SUPERFAMILY HAD-like 149 489 IPR036412 -
Vian4g02316 1807 Coils Coil 1710 1737 - -
Vian4g02316 1807 Pfam 5' nucleotidase family 1651 1797 IPR008380 -
Vian4g02316 1807 Pfam 5' nucleotidase family 151 490 IPR008380 -
Vian4g02316 1807 Pfam RNase H-like domain found in reverse transcriptase 1026 1120 IPR041577 -
Vian4g02316 1807 CDD RNase_HI_RT_Ty3 1057 1172 - -
Vian4g02316 1807 Coils Coil 1672 1692 - -
Vian4g02316 1807 SUPERFAMILY Ribonuclease H-like 1308 1447 IPR012337 -
Vian4g02316 1807 SUPERFAMILY Chromo domain-like 1558 1636 IPR016197 -
Vian4g02316 1807 Gene3D - 1306 1489 IPR036397 GO:0003676
Vian4g02316 1807 SUPERFAMILY DNA/RNA polymerases 874 1157 IPR043502 -
Vian4g02316 1807 NCBIfam HAD-IG family 5'-nucleotidase 151 490 IPR008380 -
Vian4g02316 1807 ProSiteProfiles Integrase catalytic domain profile. 1306 1426 IPR001584 GO:0015074
Vian4g02316 1807 FunFam Cytosolic purine 5-nucleotidase 311 492 - -
Vian4g02316 1807 Coils Coil 536 556 - -
Vian4g02316 1807 MobiDBLite consensus disorder prediction 769 783 - -
Vian4g02316 1807 MobiDBLite consensus disorder prediction 548 592 - -
Vian4g02316 1807 CDD RT_LTR 874 962 - -
Vian4g02316 1807 Pfam Integrase zinc binding domain 1243 1296 IPR041588 -
Vian4g02316 1807 Gene3D - 973 1054 IPR043128 -
Vian4g02316 1807 MobiDBLite consensus disorder prediction 117 139 - -
Vian4g02316 1807 MobiDBLite consensus disorder prediction 551 575 - -
Vian4g02316 1807 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 876 964 IPR000477 -
Vian4g02316 1807 SUPERFAMILY HAD-like 1652 1798 IPR036412 -
Vian4g02316 1807 Gene3D - 312 493 IPR023214 -
Vian4g02316 1807 Gene3D - 1208 1296 - -
Vian4g02316 1807 FunFam Transposon Tf2-6 polyprotein-like Protein 974 1062 - -
Vian4g02316 1807 Gene3D - 1055 1121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02316 Vian-Chr4 39975138 39985452 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02316 - - var:108344576 1119.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02316 4 39975138 39985452 Vian4g02316 4 39975138 39985452 ECH