Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02313 ATGGCGGCGGAGATACCGTGCTGCGGGACAAAGTTCTCATTGTACGTGTTGGTGATCGTAGGATTGGTCTGCTTCGCGGGCCTAATGGCTGGTCTCACTCTCGGACTCATGTCTCTCGGACTCGTCGACCTCGAAGTTCTCATGAAATCTGGCCGTCCTCAGGATCGAATTCACGCTTCGAAAATTTATCCAGTGGTTAAGAATCAGCATCTTCTGCTTTGCACGCTTCTGATTGGAAACTCCTTAGCCATGGAGGCTCTTCCCATTTTTCTTGATTCGCTGGTGCATCCTGCTGCTGCAGTCTTGATTTCGGTCACTCTCATTCTCATGTTTGGAGAGATATTGCCGCAGGCAATTTGCACAAGATATGGATTGACAGTTGGAGCAACGATGGCTCCATTTGTTCGTGTTCTTCTTCTTGTTTTCTACCCGGTTTCTTATCCAATCAGCAAGGTTCTTGATTGGATGTTGGGTAAAGGACATGCTGCCCTTTTGAAGAGGGCAGAGCTCAAGACTTTTGTGAACTTTCATGGAAATGAGGCCGGTAAAGGAGGAGATTTAACTCATGACGAAACGACCATCATTACTGGGGCACTTGAGTTGACAGAAAAGACTGCAAAAGATGCCATGACTCCCATATCAAAGGCATTTTCCCTTGATCTGGATGCAACTCTAAATTTGGAGACACTGAATTCGATAATGACAATTGGTCATAGTAGAGTTCCAGTTTATGCAGGAGAGAAAACTAATATTATTGGACTTGTTCTGGTGAAAAATCTCTTTATGGTTGATTCAAAGGCTGCAGTTCCTCTAAGAAAAATGGTCATCAGAAAAATTCCTCGTGTTTCAGAGAACATGCCTCTGTATGATATTTTGAACGAATTTCAGAAGGGTCATAGTCATATTGCAGTAGTGTATAAGGATCTGAACAGTAAAAACGAGGCCCCAAAAAAGGTTAAAGATGGAGAACAGCATGATCTCAGGGACAACTATAAGAACAAGGGAGAGAATGCACCCTTGGATAAAGGTTCTAAATTGGAGTCAGGTGATACTTTGGCTACTGTTACTAAGATTGATGGTTCTCAACAAGCTAAGAAAAGTCCACCAGCAACTCCTGCTTTTAAAAAGCGACATAGAGGGTGTTCATATTGCATCCTGGACCTTGATAATGCGCCCCTGCCAGTATTTCCACCCAATGAAGTAGTTGTTGGTGTTATTACAATGGAGGATGTCATCGAAGAGCTTCTTCAGGAGGAGATATTGGATGAAACTGATGAATATGTCAATATCCATAACAAGATAAAAGTTAACATGAATGCTTCAAAGGAGAAGGCTTCTGATACAAATCTGATGCAACCTTCTCAAGAGGTTCAAGGACAGCACACACCCACTAATTCAATTTCTACAGCTACTTCTGCAACAGGTTCACCTACGACAATCGATCTAATATCTGAAAGTGAGTCACTAAGGAATCAATAG 1479 0.426 MAAEIPCCGTKFSLYVLVIVGLVCFAGLMAGLTLGLMSLGLVDLEVLMKSGRPQDRIHASKIYPVVKNQHLLLCTLLIGNSLAMEALPIFLDSLVHPAAAVLISVTLILMFGEILPQAICTRYGLTVGATMAPFVRVLLLVFYPVSYPISKVLDWMLGKGHAALLKRAELKTFVNFHGNEAGKGGDLTHDETTIITGALELTEKTAKDAMTPISKAFSLDLDATLNLETLNSIMTIGHSRVPVYAGEKTNIIGLVLVKNLFMVDSKAAVPLRKMVIRKIPRVSENMPLYDILNEFQKGHSHIAVVYKDLNSKNEAPKKVKDGEQHDLRDNYKNKGENAPLDKGSKLESGDTLATVTKIDGSQQAKKSPPATPAFKKRHRGCSYCILDLDNAPLPVFPPNEVVVGVITMEDVIEELLQEEILDETDEYVNIHNKIKVNMNASKEKASDTNLMQPSQEVQGQHTPTNSISTATSATGSPTTIDLISESESLRNQ 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02313 492 Pfam Cyclin M transmembrane N-terminal domain 18 189 IPR002550 -
Vian4g02313 492 ProSiteProfiles CNNM transmembrane domain profile. 8 191 IPR002550 -
Vian4g02313 492 SUPERFAMILY CBS-domain pair 195 417 IPR046342 -
Vian4g02313 492 MobiDBLite consensus disorder prediction 315 347 - -
Vian4g02313 492 PANTHER METAL TRANSPORTER CNNM 3 459 IPR045095 GO:0010960
Vian4g02313 492 MobiDBLite consensus disorder prediction 444 492 - -
Vian4g02313 492 CDD CBS_pair_CorC_HlyC_assoc 205 306 IPR044751 -
Vian4g02313 492 MobiDBLite consensus disorder prediction 315 343 - -
Vian4g02313 492 FunFam DUF21 domain-containing protein 189 324 - -
Vian4g02313 492 Gene3D - 189 323 IPR046342 -
Vian4g02313 492 Gene3D - 382 423 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02313 Vian-Chr4 39956363 39960395 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02313 K16302 - gmx:100804572 852.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02313 4 39956363 39960395 Vian4g02313 4 39956363 39960395 ECH