Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vian4g02311 | ATGGCATCATCCATTATCATTTCCGATACTCAGCCATGGAAGGACCTGAAGGCGCATGTGGAGGACATCAAGAAAACGCATCTTCGCGATCTGTTGACCGATGATAAGCGGTGCCAGTCCATGTTCCTTGAGTTCGATGACATTCTGTTGGACTATTCAAGGCAACAAGCCACTCCCGAAACTATCCAAAAACTACTTAAATTGGCGGAGGCTGCATCGCTCAAAGATAAGATTAACCGCATGTACAGCGGGGAACATATTAACAGCACGGAAAACAGGTCCGTGCTTCACGTCGCCCTTCGTGCTTCAAGGGATGCTGTCATACAAAGTGATGGGAAAAATGTTGTGCCAGAAGTTTGGAAAGTTCTTGACAACATCCAGGAGTTCTCTGAGCGGGTTCGCAATGGTTCTTGGGTTGGTGCTACAGGAAAGGCTTTGAAGGACGTTGTTGCAATTGGTATTGGGGGAAGCTTCTTGGGTCCGCTGTTTGTACACACTGCACTTCAAACAGACCCTGATGCTATTGAATCTGCAAGGGGTCGTCAGCTGCGCTTTCTTGCAAATGTGGATCCCATTGACGTTGCTAGAAATATCACAGGATTAAATCCTGAAACAACACTTGTTGTGGTTGTTTCAAAGACTTTTACAACAGCTGAAACCATGCTGAATGCTCGAACTCTTAGAGAATGGATATCATCTGCACTTGGGCCCTCTGCTGTTGCAAAGCATATGGTGGCTGTTAGCACAAATCTCAAGCTTGTGGAACAGTTTGGTATTGACCCTAACAATGCTTTTGCGTTTTGGGATTGGGTCGGTGGGCGATACAGTGTTTGCAGTGCTGTTGGAGTTTTGCCATTGTCTTTACAATACGGTTTCTCAGTAATAGAGAAGTTCTTAAGTGGGGCTTCAAGCATTGATCAACATTTCTATTCACAGCCCTTTGAAAGTAATATACCTGTGCTTCTGGGTTTGTTGAGCATATGGAATGTTTCATTTCTTGGATATCCTGCCAGAGCCATCTTACCTTATAGTCAAGCTCTGGAGAAGTTGGCCCCCCACATTCAACAGGTTAGCATGGAGAGTAATGGCAAGGGTGTTTCAATTGATGGTGTTCCTCTACCATTTGAGGCTGGCGAAATTGATTTTGGTGAACCAGGAACTAATGGGCAGCATAGCTTTTATCAGCTCATACATCAGGGGCGTGTAATTCCTTGTGATTTTATTGGAGTTGTAAAAAGTCAGCAACCTGTCTTTCTGAAAGGTGAAGTAGTGAGTAACCATGATGAGCTCATGTCCAACTATTTTGCACAACCTGATGCCCTTGCATATGGAAAGACAGCAGACCAGCTGCAAAAGGAGAATGTTTCCCCACACCTTATTCCTCACAAGACATTCAGCGGTAACCGACCTTCTCTCAGCCTACTGCTTCCATCATTGAATGCTTACAATATTGGGCAGTTGTTGGCAATCTATGAACACAGAATTGCTGTAGAGGGTTTCATTTGGGGAATCAATTCTTTTGATCAGTGGGGAGTAGAGCTGGGGAAGTCACTGGCTACTCAAGTCAGAAAACAACTTAATGCATCTCGAACAAAACAAGAACCAGTTCAAGGTTTTAATTTCAGTACAACAACAATGTTGAATAGATATCTTCAGGCAAGTTTAGACATCCCAGCGGATCTGCCAACTTCTTTACCGAAGATCTAA | 1707 | 0.4417 | MASSIIISDTQPWKDLKAHVEDIKKTHLRDLLTDDKRCQSMFLEFDDILLDYSRQQATPETIQKLLKLAEAASLKDKINRMYSGEHINSTENRSVLHVALRASRDAVIQSDGKNVVPEVWKVLDNIQEFSERVRNGSWVGATGKALKDVVAIGIGGSFLGPLFVHTALQTDPDAIESARGRQLRFLANVDPIDVARNITGLNPETTLVVVVSKTFTTAETMLNARTLREWISSALGPSAVAKHMVAVSTNLKLVEQFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVIEKFLSGASSIDQHFYSQPFESNIPVLLGLLSIWNVSFLGYPARAILPYSQALEKLAPHIQQVSMESNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQGRVIPCDFIGVVKSQQPVFLKGEVVSNHDELMSNYFAQPDALAYGKTADQLQKENVSPHLIPHKTFSGNRPSLSLLLPSLNAYNIGQLLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRKQLNASRTKQEPVQGFNFSTTTMLNRYLQASLDIPADLPTSLPKI | 568 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vian4g02311 | 568 | PRINTS | Glucose-6-phosphate isomerase signature | 149 | 168 | IPR001672 | GO:0004347|GO:0006094|GO:0006096 | |
| Vian4g02311 | 568 | PRINTS | Glucose-6-phosphate isomerase signature | 265 | 283 | IPR001672 | GO:0004347|GO:0006094|GO:0006096 | |
| Vian4g02311 | 568 | PRINTS | Glucose-6-phosphate isomerase signature | 343 | 364 | IPR001672 | GO:0004347|GO:0006094|GO:0006096 | |
| Vian4g02311 | 568 | PRINTS | Glucose-6-phosphate isomerase signature | 499 | 512 | IPR001672 | GO:0004347|GO:0006094|GO:0006096 | |
| Vian4g02311 | 568 | PRINTS | Glucose-6-phosphate isomerase signature | 467 | 485 | IPR001672 | GO:0004347|GO:0006094|GO:0006096 | |
| Vian4g02311 | 568 | PRINTS | Glucose-6-phosphate isomerase signature | 485 | 499 | IPR001672 | GO:0004347|GO:0006094|GO:0006096 | |
| Vian4g02311 | 568 | ProSitePatterns | Phosphoglucose isomerase signature 2. | 499 | 516 | IPR018189 | GO:0004347|GO:0006094|GO:0006096 | |
| Vian4g02311 | 568 | CDD | SIS_PGI_2 | 336 | 522 | IPR035482 | - | |
| Vian4g02311 | 568 | Gene3D | - | 13 | 508 | - | - | |
| Vian4g02311 | 568 | ProSiteProfiles | Glucose-6-phosphate isomerase family profile. | 10 | 553 | IPR001672 | GO:0004347|GO:0006094|GO:0006096 | |
| Vian4g02311 | 568 | SUPERFAMILY | SIS domain | 8 | 553 | IPR046348 | GO:0097367|GO:1901135 | |
| Vian4g02311 | 568 | FunFam | Glucose-6-phosphate isomerase | 100 | 296 | - | - | |
| Vian4g02311 | 568 | Gene3D | - | 509 | 554 | IPR023096 | GO:0004347|GO:0006096 | |
| Vian4g02311 | 568 | FunFam | Glucose-6-phosphate isomerase | 509 | 553 | - | - | |
| Vian4g02311 | 568 | FunFam | Glucose-6-phosphate isomerase | 6 | 99 | - | - | |
| Vian4g02311 | 568 | Hamap | Glucose-6-phosphate isomerase [pgi]. | 45 | 526 | IPR001672 | GO:0004347|GO:0006094|GO:0006096 | |
| Vian4g02311 | 568 | Pfam | Phosphoglucose isomerase | 51 | 546 | IPR001672 | GO:0004347|GO:0006094|GO:0006096 | |
| Vian4g02311 | 568 | CDD | SIS_PGI_1 | 120 | 288 | IPR035476 | - | |
| Vian4g02311 | 568 | Gene3D | - | 97 | 296 | - | - | |
| Vian4g02311 | 568 | FunFam | Glucose-6-phosphate isomerase | 297 | 508 | - | - | |
| Vian4g02311 | 568 | ProSitePatterns | Phosphoglucose isomerase signature 1. | 269 | 282 | IPR018189 | GO:0004347|GO:0006094|GO:0006096 | |
| Vian4g02311 | 568 | PANTHER | GLUCOSE-6-PHOSPHATE ISOMERASE | 6 | 552 | IPR001672 | GO:0004347|GO:0006094|GO:0006096 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vian4g02311 | Vian-Chr4 | 39940669 | 39947802 | Transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vian4g02311 | K01810 | - | gmx:100807719 | 1058.13 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vian4g02311 | 4 | 39940669 | 39947802 | Vian4g02311 | 4 | 39940669 | 39947802 | ECH |