Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02220 ATGTGGTTCATCCTTCTCTCTCTCGTTATGTCTCTGCAACTTTCATCTTCAGCAGTAGAAATCCTGCATCAAGGTTCATCCCTCTTAGTGGAGGGCCCCAACGATTTCATGCTCTCACCAAATGCCATCTTCTGTGCCGGTTTCTATGCAGTTGGCCAAAACGCATATTCATTCGCTGTTTGGTACTCCCAAACCAACGGCGAAACCCAGGATGCAACCGTCGTATGGATGGCTAACCGTGACTACCCCGTTAACGGCAAGGGCTCGAAGCTTTCCCTTCTTCCCAACGGCAACCTCGCCTTAAGGGACGCCGACGAATCCCACATTTGGTCAACAAACACCGTTTCACTGTTGTCTGTGCAACTGTTTCTCGACAACACTGGCAACCTCGTTCTGCGTGAAACGAAGGGTGGCGGTGTCGTATTGTGGCAGAGCTTTGATTTCCCTACGGACACGCTTTTGCCTCAACAAGTGTTCACGAGATACGCGAAGCTGGTCTCTTCTAGAAGCGAGAGCAACAAGTCCTCCGGTTTCTACTCCTTGTTCTTCGACAACGACAACGTTCTTCGTCTTCTTTACGATGGTCCTGAAGTTTCTGGCCTTTACTGGCCAAATCCATGGTTGGCCACTTGGGACGCTGGACGTTCCACTTACAACAACAGTAGAGTTGCGGTGATGGACACACTCGGCAATTTCAGTTCTTCAGATGATTTCTCTTTTTTGACATCCGATTATGGCACTCTGATCCAAAGAAGATTAGTGCTTGATCATGATGGAAACATTCGTGTTCATAGTCGAAGAAATGGAGGAGAGAAATGGTCTGTTACGTGGCAAGCCAAAGCAAAACCGTGTAGTATTCATGGTATTTGTGGCCCTAACAGTTTGTGCTCTTACCACCAAAATTCTAGTGTGAAGTGTTCTTGCCTTCCCGGGTACAAGTGGAAGAATGATCACGATTGGTCTTTTGGATGTGAACCGAAATTCTCTACTCTTTGCAACAAAACACAGTCTCGGTTTTTGCATATAAGCCGCGTGGAGTTATATGGCTATGACTATGGGATTTTGACAAATTACACTCTCCATCAGTGTCAGCAGTTATGCCTTCAATTATGCGACTGTAAAGGCATTCAGTATACATATGTCTTTGGCACTGGCACTTATACTTGTTACCCAAAGTTGCAGCTACGGAATGCGTATCAGATACCGTATTTCAACGCTGATTTGTACCTGAAACTTCCAGCAAATAGTTCATATTCTTTTGAAGGATCCACACATGAGCAGAGTCTTGATTGTTCTTCGAGTTTGAGCACGATGCAGCTTGAGAGAGCGTATGACATGAGTCGTGAGAACAGATATGTTAAGTTCTTGCTTTGGTTTGTAGGAGGATTGGGGGCGTTCGAAGTTTTATGCATATTTGTGATTTGTTTTTTTCTGGTGAGAACAAGGGAGAGAAAATATTCTGGTGTGGATAGACGAGTCTATCATTTGGCCATGACTGGTTTCAGAAAGTTCAGTTATTCTGAACTGAAACAAGCCACGAAAGGGTTCCGTGAGGAGATAGGAAGGGGTGCAGGAGGGGTTGTATTCAAAGGTGTGTTGTTGGATCAACGAGTTGCAGCTGTGAAGAGACTGAAGGATGCGAATCAAGGAGAAGAAGATTTCCTGGCAGAAAGTGCAACAAAGGATATTGATTACACTGATAATGGAGTGGAGAAAGAGCATCTCAGCATGGTGGCGTGGCTTAAAGATAAACAGAAAAATGGATGCAGTTGGGTTGGTGAAATATTGAAACCCAATGTAAAAGGAGTTTATGAGGAAGATAAGATCGAAGCTTTGTGTCTTTGGTGCATGAAGAACCTTGATGATGGAGATGGAGATGGAGGTGCTCAAAACTCCGATGATGTTCCAGAAAAAGAAAAACGCAGACTTCGGATATAA 1938 0.4469 MWFILLSLVMSLQLSSSAVEILHQGSSLLVEGPNDFMLSPNAIFCAGFYAVGQNAYSFAVWYSQTNGETQDATVVWMANRDYPVNGKGSKLSLLPNGNLALRDADESHIWSTNTVSLLSVQLFLDNTGNLVLRETKGGGVVLWQSFDFPTDTLLPQQVFTRYAKLVSSRSESNKSSGFYSLFFDNDNVLRLLYDGPEVSGLYWPNPWLATWDAGRSTYNNSRVAVMDTLGNFSSSDDFSFLTSDYGTLIQRRLVLDHDGNIRVHSRRNGGEKWSVTWQAKAKPCSIHGICGPNSLCSYHQNSSVKCSCLPGYKWKNDHDWSFGCEPKFSTLCNKTQSRFLHISRVELYGYDYGILTNYTLHQCQQLCLQLCDCKGIQYTYVFGTGTYTCYPKLQLRNAYQIPYFNADLYLKLPANSSYSFEGSTHEQSLDCSSSLSTMQLERAYDMSRENRYVKFLLWFVGGLGAFEVLCIFVICFFLVRTRERKYSGVDRRVYHLAMTGFRKFSYSELKQATKGFREEIGRGAGGVVFKGVLLDQRVAAVKRLKDANQGEEDFLAESATKDIDYTDNGVEKEHLSMVAWLKDKQKNGCSWVGEILKPNVKGVYEEDKIEALCLWCMKNLDDGDGDGGAQNSDDVPEKEKRRLRI 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02220 645 PANTHER OS07G0415500 PROTEIN 5 560 - -
Vian4g02220 645 MobiDBLite consensus disorder prediction 625 645 - -
Vian4g02220 645 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 197 IPR036426 -
Vian4g02220 645 MobiDBLite consensus disorder prediction 631 645 - -
Vian4g02220 645 ProSiteProfiles Bulb-type lectin domain profile. 13 145 IPR001480 -
Vian4g02220 645 SUPERFAMILY Protein kinase-like (PK-like) 493 560 IPR011009 -
Vian4g02220 645 ProSiteProfiles PAN/Apple domain profile. 332 413 IPR003609 -
Vian4g02220 645 Gene3D - 19 147 IPR036426 -
Vian4g02220 645 SMART ntp_6 334 412 IPR003609 -
Vian4g02220 645 SMART blect_4 28 149 IPR001480 -
Vian4g02220 645 CDD B_lectin 32 149 IPR001480 -
Vian4g02220 645 Pfam S-locus glycoprotein domain 235 315 IPR000858 GO:0048544
Vian4g02220 645 Gene3D Phosphorylase Kinase; domain 1 479 561 - -
Vian4g02220 645 Pfam D-mannose binding lectin 73 161 IPR001480 -
Vian4g02220 645 FunFam Serine/threonine-protein kinase 150 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02220 Vian-Chr4 38972314 38983806 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02220 475 581 Receptor kinase-like Gene Family AT1G66980 37.383 2.16e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02220 - - gmx:100792388 916.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02220 4 38972314 38983806 Vian4g02220 4 38972314 38983806 ECH