Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02172 ATGGCATGGCTGGCTCGCTCCTTCGGAAATTCTCTCCGACTCGATGGCGACGGAGATCACGAAAACGACACCGTACTCGATCCACCTACCACGTCATTGAGAGACCCCCTGCAGCCGCAAGCACGAGAAAATGAATTCGGATCAGAATCAGAAGAAGAAGAAGACGAAGAAACGGAAGGGCGTGGAGTCAAAGAAGACCTCGACGAAATCAAGCAAACCCTGACTCGCCAATTTTGGGGAATGGCATCCTTCCTCACTCCGCCGTCAACGGATTCTCATTCTCATTCTCTTTCTCTTGCTCATACTCAATCCGATCCCTCTTCGTGTATCTCCAATCAATTCAAACATCGCTCTTTTTCTCCGAACGAAGAACCGCAATTGGACGAGGCTGCCGTTTCCAATCGCTCTAATTCGGTTTCGTTGGGATCCGATTCGGAAGGGGATTGCGGTCCAGAACAAGGCGCTGTTGGAATCACGGAGGAGGTCTTGGCCTTCGCGATGAACATCGCTATGCATCCCGAGACGTGGTTGGATTTTCCTATTGATGAAGAAGACGACACCGACGATTTTGATATGTCTGATGCACAAAAAGAGCATGCAGCGGTTGTTGAAAGATTAACTCCTAGATTAGCTGCGCTCAGAATTGAACTATGCCCTTGCCATATGAGTGAAAGCTATTTCTGGAAAGTGTATTTTGTACTATTGCATTCAAGGCTTAACAAAGAAGATGCAGGGGTTTTGTCTACAACCCAGATCACGGCAGCCAGAGCATTGTGGATGCAGGAATTGCATAAACAAACAAAGCCTGACTTTGAAATTTTTGGAAGAAGTGCTTCCTACCCAAAAGACAACGCACGGTACAATGAATTAACTCCCAGCCTATTAGATGATGCTTATTCTGATGACATGCCTAATCAGACATATGGATATAGAACAACCTCTTTTTCCGCGAGGACAGATTATGAGACTGATAAATACATGGTTGAAACATCTGGAACGCATCTCACTGATAAGTCTGTTATTGAGGAAAAGTCAATTATTAAAACTGATAACAAGGATCCGAAATGTGGTCGACCCTCTCAAATTATTATTAAGGATTATGATGAAGATGACGATGAGTGGCCAGAGGAAGATTCTGATTTAGGTGAATATGGTGGAACAACTCTCCCCATAGTAAATGAAGAAGACATATCCTTCAGCGATCTCGAAGATGATGATTATGGCATTAAACCTGTTACTTTAAGTACAGGTGGTTTGAAATTGGTTTGA 1269 0.4421 MAWLARSFGNSLRLDGDGDHENDTVLDPPTTSLRDPLQPQARENEFGSESEEEEDEETEGRGVKEDLDEIKQTLTRQFWGMASFLTPPSTDSHSHSLSLAHTQSDPSSCISNQFKHRSFSPNEEPQLDEAAVSNRSNSVSLGSDSEGDCGPEQGAVGITEEVLAFAMNIAMHPETWLDFPIDEEDDTDDFDMSDAQKEHAAVVERLTPRLAALRIELCPCHMSESYFWKVYFVLLHSRLNKEDAGVLSTTQITAARALWMQELHKQTKPDFEIFGRSASYPKDNARYNELTPSLLDDAYSDDMPNQTYGYRTTSFSARTDYETDKYMVETSGTHLTDKSVIEEKSIIKTDNKDPKCGRPSQIIIKDYDEDDDEWPEEDSDLGEYGGTTLPIVNEEDISFSDLEDDDYGIKPVTLSTGGLKLV 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02172 422 MobiDBLite consensus disorder prediction 47 62 - -
Vian4g02172 422 MobiDBLite consensus disorder prediction 127 144 - -
Vian4g02172 422 ProSiteProfiles BSD domain profile. 187 239 IPR005607 -
Vian4g02172 422 MobiDBLite consensus disorder prediction 87 149 - -
Vian4g02172 422 Pfam BSD domain 187 243 IPR005607 -
Vian4g02172 422 Gene3D BSD domain 153 248 IPR035925 -
Vian4g02172 422 PANTHER BSD DOMAIN-CONTAINING PROTEIN 1 407 - -
Vian4g02172 422 MobiDBLite consensus disorder prediction 366 388 - -
Vian4g02172 422 SMART wurzfinal6 187 239 IPR005607 -
Vian4g02172 422 MobiDBLite consensus disorder prediction 366 380 - -
Vian4g02172 422 MobiDBLite consensus disorder prediction 87 120 - -
Vian4g02172 422 MobiDBLite consensus disorder prediction 1 67 - -
Vian4g02172 422 SUPERFAMILY BSD domain-like 157 243 IPR035925 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02172 Vian-Chr4 38561437 38564481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02172 157 239 EF-hand Containing Proteins AT1G69030 31.183 3.50e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02172 - - gmx:100794286 637.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02172 4 38561437 38564481 Vian4g02172 4 38561437 38564481 ECH