Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02163 ATGGCACCACCGTTGTTCAATTGGGGGGTGAAGGACACCCACAGGGGAACCCCTGTGGTGGTGAAGATGGAGAACCCAAATTGGTCGATGGTGGAACTGGAAGGTCCCGAAGAAGATGACTTAATGACACCAGCTTCTCCTACGGGTGTTTCACGAGACAAAGGAAAAGGAAGAGGCAAAAATGCGAAACAACTCACATGGGTTCTTCTCCTCAAAGCACACCGCGCCGCCGGCTGCCTGACCTCCCTGGCGCCGGCATTGTGGGGGCTCGTCTCCGCCGTTAAACGCCGCGTCGCCGCCGGAAAAACTGATGCCGACACCGACGGCGGCAGAGAGCTGGAGAACCCCACCGTGAAGACGCGTTTCTATTCCTGCATCAAGGTCTTTCTGTGGCTTTCCGTGTTTCTCTTGTTTTTCGAGGTTGCTGCGTACTTCAAAGGGTGGCATTTCGTTGCGGCGGGGATTCAGTTGGAGCACTTTCTGTGGGCACCCGCTTTTGGAGTCAAGGATTTCTTCGTTTGGCTCTACACGAGATGGGTTTTTTTTCGCGTGGAGTATCTCGCTCCTCCTCTGCAGTTTCTAACCAATGCGTGCATCGTGCTTTTCCTTATTCAGAGTGTGGATAGGCTTGTTCTGTGCTTGGGGTGTTTCTGGATCCGGTTTAAGAAGATCAAGCCTGTCCCCAAAAGTGGGGATGCAATTGTAGATCTTGAATCTGGAGAAAGCAAGGGTTTTTCTTTTTTCCCAATGGTTCTTGTGCAGATCCCCATGTGCAATGAGAAGGAGGTTTATCAGCAATCGATTGGTGCGGTGTGTAATTTGGATTGGCCGAAGGGGAAGTTGTTGATTCAGGTTTTGGATGATTCCGATGACCCAACGACGCAGTTGCTAATAAAGGAGGAGGTTCAGAAGTGGCAACAAGAGGGTGCCAACATTTTGTACCGGCATCGCGTGATTAGAGATGGGTACAAGGCCGGGAATTTGAAATCCGCTATGAATTGTAGCTACATTAACGACTATGAGTTTGTTGCAATCTTTGATGCAGATTTTCAGCCTACTCCAGATTTTCTGAAAAAAACAGTTATTCACTTTAAGGATAATGATGAATTGGGGCTTGTTCAAGCAAGATGGTCCTTTGTGAACAAGGATGAGAACCTCCTAACGAGGTTGCAGAACATTAACCTGTCTTTTCATTTTGAAGTAGAGCAGCAAGTGAATGGGGTTTTCATTAACTTCTTTGGGTTCAATGGAACTGCTGGAGTTTGGAGGATAAAGGCTTTGGAGGAATCTGGTGGTTGGTTGGAGAGAACTACTGTTGAGGACATGGACATTGCCGTTCGAGCTCATCTTCATGGCTGGAAATTCATTTTCCTCAATGATGTTGAGTGCCAATGTGAGCTACCGGAATCTTACGAAGCTTACAGGAAACAGCAGCACAGATGGCATTCTGGGCCAATGCAGTTGTTCCGCCTTTGTTTGCCTGATATCATTCGGTCCAGGATAAGTGTGTGGAAGAAATTCAACATGATATTTCTCTTCTTCCTTCTCAGAAAGCTGATCTTACCATTCTATTCGTTCACCTTGTTTTGTATAATTCTACCTATGACAATGTTCGTGCCGGAGGCTGAGCTTCCTGCGTGGGTAGTGTGTTACATCCCTGCTGCCATGTCCTTTCTCAACATTCTTCCGGCTCCGAAGGCCTTTCCCTTCATTGTCCCTTATCTCCTATTTGAGAACACCATGTCAGTTACCAAGTTCAATGCCATGATCTCAGGCCTGTTCCAGCTAGGTAGTGCATACGAGTGGGTGGTCACTAAGAAATCTGGTCGTTCTTCTGAAGGTGATTTGGCTTCATTGATTGAGAAAGGACCAAAGCTTCAAAGAGGGTCCTCGGCACCTGATCTTGAGGAAATAAAAGAGGAACTTAAAAGGCAGGAGGAGAAGACCTCTAAGAAGAAGAAAAAGCATAACAGAATATATATGAAGGAGCTTGCTTTGGCCTTTCTACTCCTAACAGCCTCAGCAAGGAGTCTCCTCTCAGCTCAAGGGATCCATTTCTACTTTTTGTTATTCCAGGGAATATCATTCCTCTTGGTTGGTCTTGACTTGATTGGTGAACAGGTGGACTGA 2130 0.47 MAPPLFNWGVKDTHRGTPVVVKMENPNWSMVELEGPEEDDLMTPASPTGVSRDKGKGRGKNAKQLTWVLLLKAHRAAGCLTSLAPALWGLVSAVKRRVAAGKTDADTDGGRELENPTVKTRFYSCIKVFLWLSVFLLFFEVAAYFKGWHFVAAGIQLEHFLWAPAFGVKDFFVWLYTRWVFFRVEYLAPPLQFLTNACIVLFLIQSVDRLVLCLGCFWIRFKKIKPVPKSGDAIVDLESGESKGFSFFPMVLVQIPMCNEKEVYQQSIGAVCNLDWPKGKLLIQVLDDSDDPTTQLLIKEEVQKWQQEGANILYRHRVIRDGYKAGNLKSAMNCSYINDYEFVAIFDADFQPTPDFLKKTVIHFKDNDELGLVQARWSFVNKDENLLTRLQNINLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLHGWKFIFLNDVECQCELPESYEAYRKQQHRWHSGPMQLFRLCLPDIIRSRISVWKKFNMIFLFFLLRKLILPFYSFTLFCIILPMTMFVPEAELPAWVVCYIPAAMSFLNILPAPKAFPFIVPYLLFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSGRSSEGDLASLIEKGPKLQRGSSAPDLEEIKEELKRQEEKTSKKKKKHNRIYMKELALAFLLLTASARSLLSAQGIHFYFLLFQGISFLLVGLDLIGEQVD 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02163 709 Pfam Glycosyl transferase family group 2 343 537 IPR001173 -
Vian4g02163 709 SUPERFAMILY Nucleotide-diphospho-sugar transferases 251 528 IPR029044 -
Vian4g02163 709 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 176 706 - -
Vian4g02163 709 FunFam probable xyloglucan glycosyltransferase 5 242 467 - -
Vian4g02163 709 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 245 466 IPR029044 -
Vian4g02163 709 MobiDBLite consensus disorder prediction 36 58 - -
Vian4g02163 709 Coils Coil 632 659 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02163 Vian-Chr4 38481028 38483670 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02163 4 709 Miscellaneous Gene Families AT4G07960 77.191 0.0 1069
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02163 - - gmx:100805969 1274.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02163 4 38481028 38483670 Vian4g02163 4 38481028 38483670 ECH