Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02162 ATGTGCGCCGAAAACATTACCACTGTCGTCGGAGAATGCAGATCGTCGAAGCGCGACGGCGAAGTTGATGTCGTAATTGTTGGAGCTGGTGTCGCCGGCTCCGCTCTGGCTTACACTCTCGGCAAGTTTTTAGATGGTATAGCAATATGTGCTTCAGGACTAGGAGTTATGCGGTCCAGCTGGTTCTATCCTTCTCCATTGTGTGGAATTGATGCTCAACAAGTGTTTGGTTATGCTCTTTTCAAGGATGGGAAACACATAAGACTCTCTTATCCGTTGGAAAAGTTTCACTCAGATGTTGCCGGCAGAAGCTTTCACAATGGACGTTTTATTCAGAGGATGAGAAAAAAGGCTGTCTCCCTTCTCAAGTTTGAAGTTACGTATGCAATCAGTGTAAGACTGGAGCAAGGAACAGTTACTTCCCTACTCGAAGAGAAGGGGGTAATTAAAGGCGTGCAGTACAAAACCAAGGATAGTCAAGAATTATCAGTTTGTGCACCCTTTACCATTGTTTGTGATGGCTGTTTTTCAAACTTGCGTCGTTCTCTTTGTAATCCTAAGCCTGTGGCGTCCACTATAAATACGCTAGCAGGAACTCTTTATAAGGTTTTTTGCGCATCACCTGATCCAGCGAGGAAGGAAATGCGCCAAGCCTGCTTCGATTATCTTAGTCTTGGAGGTCAATTCTCGGAATGA 696 0.4511 MCAENITTVVGECRSSKRDGEVDVVIVGAGVAGSALAYTLGKFLDGIAICASGLGVMRSSWFYPSPLCGIDAQQVFGYALFKDGKHIRLSYPLEKFHSDVAGRSFHNGRFIQRMRKKAVSLLKFEVTYAISVRLEQGTVTSLLEEKGVIKGVQYKTKDSQELSVCAPFTIVCDGCFSNLRRSLCNPKPVASTINTLAGTLYKVFCASPDPARKEMRQACFDYLSLGGQFSE 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02162 231 Gene3D - 69 227 IPR036188 -
Vian4g02162 231 PANTHER SQUALENE MONOOXYGENASE 187 230 IPR040125 GO:0004506|GO:0016126
Vian4g02162 231 Pfam Squalene epoxidase 187 230 IPR013698 GO:0004506|GO:0016020|GO:0050660
Vian4g02162 231 SUPERFAMILY FAD/NAD(P)-binding domain 17 191 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02162 Vian-Chr4 38469979 38473373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02162 187 230 Miscellaneous Gene Families AT2G22830 81.818 5.29e-16 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02162 K00511 - gmx:100820031 237.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02162 4 38469979 38473373 Vian4g02162 4 38469979 38473373 ECH
Vian7g00632 7 14322363 14326237 Vian4g02162 4 38469979 38473373 PCT