Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02140 ATGGCGGAGGAAGCACAGTATTCATCGGGAACGGAGTCCGCATCCCTCAAGCGCAAGTACGAAGACCAATCCTCCGACAGACCCACCGGATTCTCTGCGGGCCCCGCCACCGGCATCGAGCTCGCCAAGCAGCGTGCTCAAGAAGTCGCCGCTCGCCTCCTCAGTGTCACTCCTCCTCCCCCGCTCGACTCCAAGCGTCCCAAACCCGATAACGGTGCTCCTTCCTCCGGTTTCGATTCTTACGATGCGAAGCCTCAGTACTCGGCCGTTCCCCCCGTCTCCTACAGTCACCAAGGAACGAGCAAGAAGATTGATATCCCTAACGGCAGGGTTGGTGTGATTATTGGCAAAGGTGGAGAGACCATTAAGTATCTCCAGTTGCAGTCTGGTGCCAAAATTCAAGTTACTCGCGATATGGACGCCGATCCTAATTCTGCTAACAGGACCGTTGAGCTTATGGGAACTCCCGAGGCAATCGCCTCTGCAGAGAAACTCATTAATGAAGTTCTTGCTGAGGCTGAATCTGGAGGTTCTGGTATTGTTGCTCGAAGACTGACCGGACAAGCTGGGTCGGATGAATTTGTCATGAGAATTCCGAATAATAAGGTTGGCCTTATAATTGGCAAAGGTGGAGAAACCATAAAGAATATGCAAGCTTCTACTGGTGCACGGATTCAGGTGATACCTCTGCATCTTCCTCCAGGTGACACATCAACTGAAAGAACATTGAAAATTGATGGGACACCTGAGCAAATTGAGTCTGCAAAGGAGTTGGTTAATCAAATCATCAGTGGCGAGAATCGTCTTAGAAATCCTGCAATGTCTGGTGGTTATCCTCAGCAAGGTTACCAATCTCGACCACCCTCTAACTGGGCTCCCCCTGCTCCAATGCAGCAGCCTGGTTATGGTTATATGCAGCCTGGTGCATATTCTGGTCCATCACCTCAGTATAATATGCCTCAACCACCATATGCAGGCTATCCTCCCCAACAACCAGGTGGATATTCCACTAGCTGGGACCAGTCTTCTGCACCACCTCATCAACAGTCTACTCATGCTGGGGGCTATGATTACTATAGTCAACAGCCACAGCAACCGCAAAATCCTGGAGGGCCAGCACCTCCAGGGGATAGCTCTACATACAGTTACAGTCAACCACCTTCATCTGGTTATAGCCAACCGGGACAGGGTTATTCTCAGGACAGTTATAATGCATACAATGCACAGTCTCAATCTGGGTATGGACAGCCACAAACATATGATCAGCAGCAAGGCTATGGCTCAGCTACTGGCTATGGTAGTGGGAATAACCAAGCACAAGAGGGCCACACTGCAAGCTATGCGTCGCAGGGAGATTCAGGCCAAGCTCCATCTACCCAACCGACCACCATTGCACAACAAGCTTATCCTACCAGCCAACAACCCAGCTCAAACACTGCCAACTACCCACCTCAGGGAACTCCTCAGTCAGGTTATGGGGTTCCCCCAACATCCCAAGCTGCTTATGGAAGTCAACCACAGCCAGGTTATGGACCTGGTTATGGAGCCCCTCAATCTCAGAAACCAAGTGGCAATCCTCCTGTTTACGGACAGTCGCAGTCACCCAGTGCGGTAGGAGGCTATGGTCAGTCAGCATATCCTGCTCAGCCTCCACCTTCCGGTTATACTCAACCCCAAGCAGAAACTGGTGCTCAGAGAGCACCTCCATCGGGCTATGGTGCAGGGCAACCAGGTTATGGTTCTCAAACATATGGTGCACCTCATGGTGGTCAGCCTGCTTATGGTCAGGTACCACCTCCTTACAGCAACAGTTCTTATGGTGCTGGTTATACTCAGGCTCCTGCATATACTGGCGATGGTAATGGCAGTGGAAATACGCAGCCTCCTCAGACTACTGTTGCTAAAGCATCGCCTCAGAGTTGA 1923 0.5122 MAEEAQYSSGTESASLKRKYEDQSSDRPTGFSAGPATGIELAKQRAQEVAARLLSVTPPPPLDSKRPKPDNGAPSSGFDSYDAKPQYSAVPPVSYSHQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSANRTVELMGTPEAIASAEKLINEVLAEAESGGSGIVARRLTGQAGSDEFVMRIPNNKVGLIIGKGGETIKNMQASTGARIQVIPLHLPPGDTSTERTLKIDGTPEQIESAKELVNQIISGENRLRNPAMSGGYPQQGYQSRPPSNWAPPAPMQQPGYGYMQPGAYSGPSPQYNMPQPPYAGYPPQQPGGYSTSWDQSSAPPHQQSTHAGGYDYYSQQPQQPQNPGGPAPPGDSSTYSYSQPPSSGYSQPGQGYSQDSYNAYNAQSQSGYGQPQTYDQQQGYGSATGYGSGNNQAQEGHTASYASQGDSGQAPSTQPTTIAQQAYPTSQQPSSNTANYPPQGTPQSGYGVPPTSQAAYGSQPQPGYGPGYGAPQSQKPSGNPPVYGQSQSPSAVGGYGQSAYPAQPPPSGYTQPQAETGAQRAPPSGYGAGQPGYGSQTYGAPHGGQPAYGQVPPPYSNSSYGAGYTQAPAYTGDGNGSGNTQPPQTTVAKASPQS 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02140 640 MobiDBLite consensus disorder prediction 1 101 - -
Vian4g02140 640 Gene3D K Homology domain, type 1 188 288 IPR036612 GO:0003723
Vian4g02140 640 Gene3D K Homology domain, type 1 94 187 IPR036612 GO:0003723
Vian4g02140 640 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 101 177 IPR036612 GO:0003723
Vian4g02140 640 MobiDBLite consensus disorder prediction 374 505 - -
Vian4g02140 640 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 194 266 IPR036612 GO:0003723
Vian4g02140 640 ProSiteProfiles Type-1 KH domain profile. 191 259 - -
Vian4g02140 640 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 86 459 - -
Vian4g02140 640 FunFam KH domain-containing protein 186 287 - -
Vian4g02140 640 MobiDBLite consensus disorder prediction 331 366 - -
Vian4g02140 640 MobiDBLite consensus disorder prediction 597 640 - -
Vian4g02140 640 MobiDBLite consensus disorder prediction 518 540 - -
Vian4g02140 640 ProSiteProfiles Type-1 KH domain profile. 99 166 - -
Vian4g02140 640 MobiDBLite consensus disorder prediction 270 640 - -
Vian4g02140 640 Pfam KH domain 195 260 IPR004088 GO:0003723
Vian4g02140 640 Pfam KH domain 103 168 IPR004088 GO:0003723
Vian4g02140 640 SMART kh_6 98 171 IPR004087 GO:0003676
Vian4g02140 640 SMART kh_6 190 264 IPR004087 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02140 Vian-Chr4 38235443 38240468 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02140 K13210 - gmx:100797476 855.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02140 4 38235443 38240468 Vian4g02140 4 38235443 38240468 ECH