Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02124 ATGGATTCTTCACAAGGGTCTACCATTGCTGGTTTCGTGGACAACGCATCCATTCAGAGGAAACAGTCTAGTTTTGATGGCGTTCCTGTGTATGTCAAGGAGCTAATTGCCGGAGGCTTTGCTGGTGCGCTTTCTAAAACCGCTGTTGCACCTCTCGAACGAGTCAAGATACTTTGGCAGACAAGGACACCTGGATTTCATTCTCTTGGGGTGTATCAATCTTTGAATAAATTAGTCAAGAGGGAAGGTTTTCAAGGATTATATAAGGGAAATGGGGCTGGTGTTATTCGCATTGTTCCATATGCAGCCTTGCATTTTATGACATATGAGCGCTACAAAAGTTGGATCTTGAATAATTATCCAATGTTAGGTTCGGGTCCTTGTATTGATCTTTTAGCAGGCTCTGCTGCAGGGGGAACTTCAGTTTTATGTACCTACCCGTTGGATCTTGCTCGTACCAAACTTGCGTACCAGGTGGTGGACACAAGAGGAGGTATCAAAGATGGTATGAGAGGAGCTCAACCTACACATAATGGCATTAAAGGTGTGCTTACAAGTGTCTATAAGGAAGGCGGAGCCCGTGGACTTTATAGGGGTGCAGGACCAACCCTTACTGGAATTCTTCCATATGCTGGTTTAAAGTTCTACATGTATGAAAAACTGAAGACTTACCTTCCAGAAGAACATCAAAAGTCCATTGTGATGCGTCTTTCTTGTGGAGCTCTAGCTGGATTGTTTGGGCAGACTTTAACATACCCTTTAGATGTTGTCAAGAGACAGATGCAGGTTGGCAGCCTGCAGAACGCTACTCATGAGAATGTCAGATATAAAAATACCATTGATGGACTTAGGACGATTGTTCGTAATCAAGGATGGAGGCAGCTCTTTCATGGCGTAAGCATTAACTATATAAGGATTGTTCCTTCAGCTGCAATTAGTTTCACCACATACGACATGATGAAGTCTTGGCTTGGCATACCACCACCTCAACAGCAAAAGTCTCGATCAGTTTCGGCAGCATGA 1023 0.4379 MDSSQGSTIAGFVDNASIQRKQSSFDGVPVYVKELIAGGFAGALSKTAVAPLERVKILWQTRTPGFHSLGVYQSLNKLVKREGFQGLYKGNGAGVIRIVPYAALHFMTYERYKSWILNNYPMLGSGPCIDLLAGSAAGGTSVLCTYPLDLARTKLAYQVVDTRGGIKDGMRGAQPTHNGIKGVLTSVYKEGGARGLYRGAGPTLTGILPYAGLKFYMYEKLKTYLPEEHQKSIVMRLSCGALAGLFGQTLTYPLDVVKRQMQVGSLQNATHENVRYKNTIDGLRTIVRNQGWRQLFHGVSINYIRIVPSAAISFTTYDMMKSWLGIPPPQQQKSRSVSAA 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02124 340 Gene3D Mitochondrial carrier domain 29 325 IPR023395 -
Vian4g02124 340 PRINTS Mitochondrial carrier protein signature 34 47 IPR002067 GO:0055085
Vian4g02124 340 PRINTS Mitochondrial carrier protein signature 47 61 IPR002067 GO:0055085
Vian4g02124 340 PRINTS Mitochondrial carrier protein signature 140 158 IPR002067 GO:0055085
Vian4g02124 340 PRINTS Mitochondrial carrier protein signature 240 262 IPR002067 GO:0055085
Vian4g02124 340 PRINTS Mitochondrial carrier protein signature 90 110 IPR002067 GO:0055085
Vian4g02124 340 PRINTS Mitochondrial carrier protein signature 197 215 IPR002067 GO:0055085
Vian4g02124 340 ProSiteProfiles Solute carrier (Solcar) repeat profile. 231 323 IPR018108 -
Vian4g02124 340 ProSiteProfiles Solute carrier (Solcar) repeat profile. 29 115 IPR018108 -
Vian4g02124 340 PANTHER SOLUTE CARRIER FAMILY 25 31 326 - -
Vian4g02124 340 ProSiteProfiles Solute carrier (Solcar) repeat profile. 125 224 IPR018108 -
Vian4g02124 340 Pfam Mitochondrial carrier protein 231 324 IPR018108 -
Vian4g02124 340 Pfam Mitochondrial carrier protein 129 227 IPR018108 -
Vian4g02124 340 Pfam Mitochondrial carrier protein 31 119 IPR018108 -
Vian4g02124 340 SUPERFAMILY Mitochondrial carrier 32 319 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02124 Vian-Chr4 38078417 38081750 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02124 107 333 Organic Solute Cotransporters AT1G14560 69.697 7.29e-113 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02124 - - vum:124826084 681.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02124 4 38078417 38081750 Vian4g02124 4 38078417 38081750 ECH