Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02112 ATGGCGGATCCCTACTACCCATATAGTGCTCCGGCAGCTGCCGACGGAGCAAGTATTGCGAGGACCAGCTTTGCTGGATATATTCCAACTGAGCCTTCAAATTCTACTGAACTGCGGGGCATTGGATCAGATTACCTGCAAAGAGACATAGGCTTGTTTTATAGTGCAGATGATACTTTGGGATCTAGGGTTCATTCTGAGCCTGTTAAGGGTTATTCACCTCTTGCAGATCCTGACCCGACTAAAAAACGAGATACGGCACCATTAGGCATTAGTCATGGTGTTTCTGATGTGAACAGTGAAAGAGCATCATCTAAAAACACTTATGATGGTCTGCCTATCTCAGCAGCGGACTCAAACATTCTGTTTGTGGGTGGACTTCCAAATAACTGCACTAGAAGGGAAGTTGGGCATCTTTTCCGCCCCTTTATTGGCTATAAGGATATCAGAGTTGTTCACAAGGAGCCTAGACGTAGCGGTGACAAGGCTATGACTTTGTGTTTTGTGGAGTTTGTTGACTCAAAATGTGCTCTCACTGCCCTGGAAGCCCTGCAAGGCTATAAATTTGATGATAAAAAGCCTGACTCGCCAAACCTAAAAATACAGTTTGCGCACTTTCCATTCCGTCTACCGTCTGATCATGGCAACAGCATAACAACATGA 663 0.4525 MADPYYPYSAPAAADGASIARTSFAGYIPTEPSNSTELRGIGSDYLQRDIGLFYSADDTLGSRVHSEPVKGYSPLADPDPTKKRDTAPLGISHGVSDVNSERASSKNTYDGLPISAADSNILFVGGLPNNCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAMTLCFVEFVDSKCALTALEALQGYKFDDKKPDSPNLKIQFAHFPFRLPSDHGNSITT 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02112 220 MobiDBLite consensus disorder prediction 64 103 - -
Vian4g02112 220 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 206 IPR000504 GO:0003723
Vian4g02112 220 CDD RRM_AtNSRA_like 119 204 - -
Vian4g02112 220 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 193 IPR000504 GO:0003723
Vian4g02112 220 Gene3D - 115 206 IPR012677 -
Vian4g02112 220 SUPERFAMILY RNA-binding domain, RBD 88 193 IPR035979 GO:0003676
Vian4g02112 220 SMART rrm1_1 121 198 IPR000504 GO:0003723
Vian4g02112 220 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 82 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02112 Vian-Chr4 37956878 37964745 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02112 - - gmx:100809186 396.741