Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02106 ATGAAGAAGACGAAGAAGAGTGTGGAAGAAAATGGGGGAAAGTTCAATGGTGCTGAGAGGTCAGCGTATTTCGCACGCAGAGAGGCAGCGAAGGTGCTGAGAGTGGTTCTCGAAGGAGACGCTAAGCGCCGCGCTCTTGCCTCCATTAAATCCCTCATCTATCAACCTTCCGTTAGGAACAAGAAGGCCACCTTCGCTCTCATTTGTCAAACCCTAAAACATCTTCCCATCATCAAAGATGTCTTGGAAGCTGCTTCCATTCTCAACGCCAAGTGGAAGCAGAGGCAACGAGAATTGGTATATATCATTGTCTATGATATCCTTTTCGGCAAGGCGGTTTCACTAGTTGGTGATGCAGAGAAGTACCTTATGCGACACGAAGGCGCTCTGCGTTCGACTCTTAAACAGCTTTTGTTACAGAGAAATGTGAAGACTGTTAAACAGTTGATTGCTCTGCATGACATTCCAGAAGTTTCTGTACCTCGGTATGTTCGTGTGAATACGCTTAAACTGGATGTTGATTCTGCCTTGCTTGAACTTCAGAAAAATTACTCGGTTCAAAAAGATAATCTGCTGGCTGAGTTACTGATTCTCCCAAACGGCACTGATTTACATGATCACCCTCTTGTTAAAAACGGCAGTATCTTTATGCAAGGTAAGGCAAGTTCCATGGCAGCACCAGCTCTTAGCCCTCAACCAGGATGGGAGGTTATTGATGCATGCGCAGCACCGGGAAACAAAACTATTCACCTTGCTGCCCTTATGAAGAGTAGGGGAAAGATTGTAGCATGTGAGCTGAAAAGGGAAAGAGTTAAGCGATTGAAAGACACTATAAAGCTATCTGGGGCTTCTAACATACAAGTCCTGAATGAGGATTTCTTGAACATTAATCCCAAGGATCCTTCATATTCTAAGGTGAACGCTATTCTCTTGGATCCTTCCTGCTCTGGTTCTGGTACTTCTGCCTCAAGATTGGACCATCTGCTCCCATCTAAAACAGCAGGTCAGGATACTGATATGAAAAGATTGAGTAAGCTTGCAACTTTCCAGAGGAAGGCTCTTCAGCATGCTTTACTTTTTCCCGCTCTTGAAAGAATTGTCTATAGTACATGTTCAATCAACCAAATTGAGAATGAGGATGTGATCAAATCTGTTCTTCCCATTGCCGAATCATACGGATTTCAATTGGCCAAGCCCTTCCCCGAGTGGCAATGCCGTGGTCTTCCTGTGTTTGAAGGCTCTGAATGCCTGATTCGGACAGATCCTGCTACGCATGGCGAGGGTTTCTTCATTGCTTTGTTTGTTAGGAAAGATGCATCTTGGGATTGTTCAAATAAAAACGAAACTAGAATTTTACGTAGCACTCCCGGAATTAAAAACGCGCAAAGAAAGAAGAAACGTATGCCGATTATTAGCACGAACCCATTCAAAATGTGGTTATATGATCAACTGATGTAG 1458 0.439 MKKTKKSVEENGGKFNGAERSAYFARREAAKVLRVVLEGDAKRRALASIKSLIYQPSVRNKKATFALICQTLKHLPIIKDVLEAASILNAKWKQRQRELVYIIVYDILFGKAVSLVGDAEKYLMRHEGALRSTLKQLLLQRNVKTVKQLIALHDIPEVSVPRYVRVNTLKLDVDSALLELQKNYSVQKDNLLAELLILPNGTDLHDHPLVKNGSIFMQGKASSMAAPALSPQPGWEVIDACAAPGNKTIHLAALMKSRGKIVACELKRERVKRLKDTIKLSGASNIQVLNEDFLNINPKDPSYSKVNAILLDPSCSGSGTSASRLDHLLPSKTAGQDTDMKRLSKLATFQRKALQHALLFPALERIVYSTCSINQIENEDVIKSVLPIAESYGFQLAKPFPEWQCRGLPVFEGSECLIRTDPATHGEGFFIALFVRKDASWDCSNKNETRILRSTPGIKNAQRKKKRMPIISTNPFKMWLYDQLM 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02106 485 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 28 437 IPR023267 GO:0001510
Vian4g02106 485 Gene3D Sun protein; domain 3 153 217 - -
Vian4g02106 485 CDD AdoMet_MTases 237 325 - -
Vian4g02106 485 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 161 437 IPR029063 -
Vian4g02106 485 Gene3D Vaccinia Virus protein VP39 218 443 IPR029063 -
Vian4g02106 485 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 152 437 IPR001678 GO:0008168
Vian4g02106 485 Pfam 16S rRNA methyltransferase RsmB/F 228 434 IPR001678 GO:0008168
Vian4g02106 485 PRINTS RNA (C5-cytosine) methyltransferase signature 209 223 IPR023267 GO:0001510
Vian4g02106 485 PRINTS RNA (C5-cytosine) methyltransferase signature 238 248 IPR023267 GO:0001510
Vian4g02106 485 PRINTS RNA (C5-cytosine) methyltransferase signature 419 436 IPR023267 GO:0001510
Vian4g02106 485 PRINTS RNA (C5-cytosine) methyltransferase signature 307 319 IPR023267 GO:0001510
Vian4g02106 485 PRINTS RNA (C5-cytosine) methyltransferase signature 363 379 IPR023267 GO:0001510
Vian4g02106 485 FunFam Methyltransferase NSUN5, putative 218 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02106 Vian-Chr4 37882715 37887649 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02106 K15264 - gmx:100775620 839.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02106 4 37882715 37887649 Vian4g02106 4 37882715 37887649 ECH