LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian4g02093	ATGCTAGCTTATTTGGAGCACTTCGTTCACGAAAAAGATGCGGAATCCAGGCAAGACGACGAAGTTGCCAGCCTCTCCAGAGCGCTTGAACTTCAAGCCAGTATCGACGAATTGGGTCCCACCGGAATCGCCAGTAAGGATTTCGGCGGCATCAAGTCCGTGAAACCCTTGGCCATGATCAGGCCTTCCTCGGCCGTCGACGTGGCCAGAGTGGTGAAAGCCGCCGCGGCGTCTCCGAGTCTGACGGTGGCGGCGCGGGGGAACGGGCACTCGGTGAACGGGCAGGCCATGGCGGAGAAGGGACTGGTCCTCGACATGCGTGCTTTGGAGGAGCCTTTTGAGATTGTCTGGATAGAAGGCACGGCCTACTTGGACGTTTCGGGAGGGGCATTATGGGAAGACGTCCTTAAACGCTGCGTTTCGGAGGTCGGACTCGCTCCGAGGTCGTGGACTGACTATCTCGGTTTAACAGTGGGTGGAACGCTGTCCTATGCCGGCGTCAGCGGGCAAACCTTCCGTTACGGTCCTCAGACATCCAACGTAACGGAATTGGAAGTTGTGACTGGCAAAGGCGAAACGCTGTGCTGCTCCCTGACACAAAACTCTGAACTTTTCTTTGGTGCGCTCGGCGGCTTAGGACAGTTGGGTATTATTACAAGGGCTAGGGTCGTTCTTCAACAAGCTCCAGATATGGTGAGGTGGATAAGAGTAGTTTACTCTGAATTTGAGGAGTATGCTGGGGACGCAGAGTTGCTGGTGGAGGAAGTAGAGGAATGTTTTGATTACGTGGAAGGGTTCGTTCTGGTAAACAGTGATGACCCGGCCAATGGATGGCCCACGGTGCGATTGGACCCGGAACAAGTGTTCGACCCGATTCATATTCCTTCCACTGTTGGCCCTGTTTTATATTGCTTGGAGCTGGGTCTTCATTATGGTAAAGCGGATGATCCTTCCCGTGGCCGTGTGGATATGGCAAGTTTGCTAGAAGTGGATGTGGATCGATTGCTCGGACGGCTGCGATTCATTCCGGGTCTCAAGTTCCAGACGGATGTGAGCTACACGGAGTTTTTGCTTCGTGTAAAGCGCGTGGAGGAGCACGCAAAAGCCAGCGGCACCTGGGATGCGCCTCATCCTTGGCTGAATTTGTTTGTGTCCAAGTCCGACATTGTTGATTTCGATCGTGAGGTGTTCAAGAAGATTCTCAAGGACGGCGTCGATGGCCCCATTTTAGTCTACCCCCTCTTGCGAACCAAAATCGACAAGAATATTTGTTCGGCAAAGCGGATAACTGTGATTCCGGAATTGTATGGGTTCTATATACGAGATTTAAAGTTTGATGGTGCTTTTCGTGGGGGAGGAATTTGGTTCTTCGAGGGTCCCCATGAACACTCTGGGTGGGATAATCGTCAGTCGGTGGTGGTGCCTGACAGTGACATCTTCTACATAGTAGCCTTGCTCCGATTCAGCCCACCACCTCCAAAGGGTCCACCACCCGAACTCTTGGTGGCGCAAAACAATGAGATTATTCAGTTCTGCACAAGCAGAGGCCTTGATTTCAAGCTATACTTTCCTCACTACCACTCTCGGGAGGATTGGATGAAACACTTTGGGAAACAATGGACCAGATTTGTGGAACGAAAGGCCAATTTTGATCCCATGGCTATCCTTGCGCCAGGACAGAGAATTTTCTCCAGAACCTCTCAACCTCGTCCTATCACATAA	1722	0.5209	MLAYLEHFVHEKDAESRQDDEVASLSRALELQASIDELGPTGIASKDFGGIKSVKPLAMIRPSSAVDVARVVKAAAASPSLTVAARGNGHSVNGQAMAEKGLVLDMRALEEPFEIVWIEGTAYLDVSGGALWEDVLKRCVSEVGLAPRSWTDYLGLTVGGTLSYAGVSGQTFRYGPQTSNVTELEVVTGKGETLCCSLTQNSELFFGALGGLGQLGIITRARVVLQQAPDMVRWIRVVYSEFEEYAGDAELLVEEVEECFDYVEGFVLVNSDDPANGWPTVRLDPEQVFDPIHIPSTVGPVLYCLELGLHYGKADDPSRGRVDMASLLEVDVDRLLGRLRFIPGLKFQTDVSYTEFLLRVKRVEEHAKASGTWDAPHPWLNLFVSKSDIVDFDREVFKKILKDGVDGPILVYPLLRTKIDKNICSAKRITVIPELYGFYIRDLKFDGAFRGGGIWFFEGPHEHSGWDNRQSVVVPDSDIFYIVALLRFSPPPPKGPPPELLVAQNNEIIQFCTSRGLDFKLYFPHYHSREDWMKHFGKQWTRFVERKANFDPMAILAPGQRIFSRTSQPRPIT	573

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian4g02093	573	Gene3D	-	106	230	IPR016169	-
	Vian4g02093	573	Gene3D	-	460	522	IPR016170	-
	Vian4g02093	573	ProSiteProfiles	PCMH-type FAD-binding domain profile.	52	228	IPR016166	GO:0071949
	Vian4g02093	573	Pfam	Cytokinin dehydrogenase 1, FAD and cytokinin binding	460	563	IPR015345	GO:0009690\|GO:0019139\|GO:0050660
	Vian4g02093	573	Pfam	Cytokinin dehydrogenase 1, FAD and cytokinin binding	229	424	IPR015345	GO:0009690\|GO:0019139\|GO:0050660
	Vian4g02093	573	Gene3D	-	44	105	IPR016167	-
	Vian4g02093	573	Pfam	FAD binding domain	56	196	IPR006094	GO:0050660
	Vian4g02093	573	SUPERFAMILY	FAD-linked oxidases, C-terminal domain	460	563	IPR016164	GO:0003824\|GO:0050660
	Vian4g02093	573	Gene3D	-	232	423	IPR016170	-
	Vian4g02093	573	Gene3D	-	523	563	IPR016167	-
	Vian4g02093	573	SUPERFAMILY	FAD-linked oxidases, C-terminal domain	229	425	IPR016164	GO:0003824\|GO:0050660
	Vian4g02093	573	PANTHER	GULONOLACTONE OXIDASE	29	564	-	-
	Vian4g02093	573	SUPERFAMILY	FAD-binding/transporter-associated domain-like	44	225	IPR036318	GO:0050660

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian4g02093	Vian-Chr4	37778532	37782287	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian4g02093	K00279		-	vum:124826179	974.156

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vian4g02093	4	37778532	37782287	Vian4g02093	4	37778532	37782287	ECH