Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02092 ATGGAGAGGTTTTCGTCTTACAGGCGTCGTTCTGACGGAGAGGGCAGTTCCGCTTCAGCCGAGGACAATCGCCGGAAGCGCGCCAGAGTTTATTTTGATTTCGATGGCGCTCATTCTGCGATTGCGGGTTCTTCGAATGTTGGGAAATCCAGTGCATCTGCCGAATATGGGGATTATAATGATATTCAGGGATCGTCTGTTCAATCCAATGATGATGCTTTGCGGTTGATGTCTTCTGGTGAGGGGAGTAACTTTGATGAAGGAGATGACAGTGACATCGCAAATGTAGATGATCTAGTAAACAAGATGGATCTTACGGATGATTTGTTGCACATGGTTTTCTCCTTTTTGGATCACTCCAACCTCTGCAAAGCTGCCAGGGTTTGTAATCAGTGGAGAATTGCTAGTGCTCACGAAGACTTCTGGAAGAGTTTGAATTTTGAAGATCGTAACATATCTGTTGAGCAATTCGAGGACATCTGTAGGCGTTATCCTAAAATCGCAACAATCCGCTTGTCCGGTCCTCCCTCTTACCAGCTTGTCATGAAGGCCGTCTCTTCGTTAAGAAATCTTGAGGCTTTAACGTTGGGAAGAGGAAATATAATGGATAATTTTTTCCATGCTTTGGCTGATTGTTCTATGTTGAGGAGACTGAGCATCAATGATGCTGTACTTGGCAGTGGTATTCAGGAAATATCAGTTAATCACGACAGACTGTGTCATCTTCAGTTGACTAAGTGCCGTGTGATGCGTATAGCTGTCAGGTGCCCACAACTCGAAACCATGTCCTTGAAGCGCAGTAACATGGCTCAGACTGTACTCAACTGCCCCCTTTTGCAAGAGCTTGATATAGGGTCTTGCCACAAACTTCCTGATTCTGCTATTCGATCAGCTGTGACATCATGCCCGCAATTAGTTTCTTTGGACGTGTCTAATTGTTCATGTGTTAGTGATGAAACATTAAGGGAGATAGCCCAGAATTGTGCCCACCTTAGTTTTCTTGATGCATCATACTGTCCAAATGTATCCCTAGAGACTGTTCGACTGCCAATGTTAACAGTTCTGAAGCTACACAGTTGTGAGGGCATCACTTCAGCTTCAATGGCTGCAATAGCTTATAGTTCCATGTTGGAGGTTTTGGAGCTTGACAATTGTAGCCTATTGACATCAGTGTCTTTAGATCTTCCTCGCTTGCAGAACATTAGATTGGTTCATTGTCGCAAATTTGCCGATTTGAATTTGATGACCCTAATGCTGTCTTCTATTTTGGTGTCCAATTGTCCTGTGCTCCATCGTATAAACATCACATCAAATTCACTTCAAGGCAGAATTTTGGCAATGCAGAAATTAACTATACCGAAGCAGGACAGCTTAACCACATTGGCTTTGCAATGCCAATCTTTGCAAGAAGTTGATCTCTCTGAATGTGAATCTTTGAATAACTCTGTATGCAATGTTTTTAATGATGGTGGGGGCTGTCCAGTGTTGAAATCATTAATTCTCGATAACTGTGAGAGTTTGACATCGGTTCAATTCATCAGTACCTCTTTAATCTGTCTTTCACTTGGTGGTTGCCGAGCAATAACTAATCTTGATCTCACATGCCCTAATCTAGAGAAACTTGTATTGGATGGCTGTGATCATTTGGAAAGAGCGTCATTTTGTCCTGTTGGTCTTTCATCTCTCAATTTAGGAATATGTCCAAAATTGAGTACACTCAGCATTGAAGCACCTTATATGGTTTCACTTGAGTTGAAAGGATGTGGTGTACTATCTGAAGCATTCATTAATTGTCCACTCTTAACATCTCTCGATGCTTCCTTTTGCAGCCAACTAACTGATGACTGCTTGTCTGCTACAACTGTCTCATGCCCACTGATTGAGTCATTGATACTGATGTCATGCCCATCAATTGGTTCAGACGGTCTTCGATCTTTATTTTGTCTTCCAAATTTGACTGTTCTTGACTTATCATACACTTTCTTGGTGAACTTGCAACCTGTTTTTGATTCTTGTTTACAGCTAAAGGTGTTAAAGCTGCAAGCATGCAAATATCTCACTGAAACATCACTTGAACCACTTTACAAAGGAGGGGCTTTACCAGCACTTCAGGAGTTAGACTTGTCTTATGGAACTTTCTCTCAGTCAGCCATAGATGAGCTTCTTGCTTGCTGCACAAACCTCACTCATGTGAGCTTGAATGGTTGTTTGAATATGCATGATTTGAATTGGGGATGCAGTTGTGGGCAGAGTAAGAATTTGCCTGCTGGGAACACCCTATCCAGGGCAAGTTCTAATGAGAATGTTCCTGAATTAAGTGAGCAATCCCCTCGCTTGTTGCAAAACCTTAATTGTGTTGGATGTCCAAATATTAGGAAGGTTGTCATTCCATTGAGGGCAAATTGTTGTCATTTGTTAATTTTAAACCTTTCGCTCTCTGCAAATTTGAAAGAGGTTGATGTTACTTGTCTCAACCTATGCTTTCTTAATTTAAGCAATTGTTCCTCTCTAGAAATTTTGAAGCTAGAGTGTCCAAGATTGACTAGTCTATTCCTTCAGTCTTGCAATGTTGACGAGGAAGCTGTTGAAGCTGCTATATCGAAATGCAATATACTGGAGACTCTTGATGTTCGCTTTTGTCCAAAGGTGATAGAGAACTCAGTTTTCTATAAGCTCAATGAGCATGGGAAGATTACGCACAATTTGTTCGAGTTTGAAGCGTATATTCAGCAGTTCGTCAACTTTGTTACCTTGATCAAGGATCAGTTTTTCCTAGTGGATTGA 2784 0.4152 MERFSSYRRRSDGEGSSASAEDNRRKRARVYFDFDGAHSAIAGSSNVGKSSASAEYGDYNDIQGSSVQSNDDALRLMSSGEGSNFDEGDDSDIANVDDLVNKMDLTDDLLHMVFSFLDHSNLCKAARVCNQWRIASAHEDFWKSLNFEDRNISVEQFEDICRRYPKIATIRLSGPPSYQLVMKAVSSLRNLEALTLGRGNIMDNFFHALADCSMLRRLSINDAVLGSGIQEISVNHDRLCHLQLTKCRVMRIAVRCPQLETMSLKRSNMAQTVLNCPLLQELDIGSCHKLPDSAIRSAVTSCPQLVSLDVSNCSCVSDETLREIAQNCAHLSFLDASYCPNVSLETVRLPMLTVLKLHSCEGITSASMAAIAYSSMLEVLELDNCSLLTSVSLDLPRLQNIRLVHCRKFADLNLMTLMLSSILVSNCPVLHRINITSNSLQGRILAMQKLTIPKQDSLTTLALQCQSLQEVDLSECESLNNSVCNVFNDGGGCPVLKSLILDNCESLTSVQFISTSLICLSLGGCRAITNLDLTCPNLEKLVLDGCDHLERASFCPVGLSSLNLGICPKLSTLSIEAPYMVSLELKGCGVLSEAFINCPLLTSLDASFCSQLTDDCLSATTVSCPLIESLILMSCPSIGSDGLRSLFCLPNLTVLDLSYTFLVNLQPVFDSCLQLKVLKLQACKYLTETSLEPLYKGGALPALQELDLSYGTFSQSAIDELLACCTNLTHVSLNGCLNMHDLNWGCSCGQSKNLPAGNTLSRASSNENVPELSEQSPRLLQNLNCVGCPNIRKVVIPLRANCCHLLILNLSLSANLKEVDVTCLNLCFLNLSNCSSLEILKLECPRLTSLFLQSCNVDEEAVEAAISKCNILETLDVRFCPKVIENSVFYKLNEHGKITHNLFEFEAYIQQFVNFVTLIKDQFFLVD 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02092 927 PANTHER OS10G0396666 PROTEIN 78 785 - -
Vian4g02092 927 FunFam F-box/LRR-repeat protein 15 515 663 - -
Vian4g02092 927 CDD F-box_FBXO41 107 146 - -
Vian4g02092 927 ProSiteProfiles F-box domain profile. 99 145 IPR001810 GO:0005515
Vian4g02092 927 FunFam F-box/LRR-repeat protein 15 665 750 - -
Vian4g02092 927 SMART LRR_CC_2 672 697 IPR006553 -
Vian4g02092 927 SMART LRR_CC_2 535 560 IPR006553 -
Vian4g02092 927 SMART LRR_CC_2 844 868 IPR006553 -
Vian4g02092 927 SMART LRR_CC_2 302 327 IPR006553 -
Vian4g02092 927 SMART LRR_CC_2 349 374 IPR006553 -
Vian4g02092 927 SMART LRR_CC_2 493 523 IPR006553 -
Vian4g02092 927 SMART LRR_CC_2 598 623 IPR006553 -
Vian4g02092 927 SMART LRR_CC_2 395 420 IPR006553 -
Vian4g02092 927 SMART LRR_CC_2 700 724 IPR006553 -
Vian4g02092 927 SMART LRR_CC_2 624 649 IPR006553 -
Vian4g02092 927 SMART LRR_CC_2 276 301 IPR006553 -
Vian4g02092 927 SMART LRR_CC_2 465 489 IPR006553 -
Vian4g02092 927 MobiDBLite consensus disorder prediction 1 24 - -
Vian4g02092 927 SUPERFAMILY RNI-like 562 901 - -
Vian4g02092 927 Pfam F-box domain 104 143 IPR001810 GO:0005515
Vian4g02092 927 Gene3D Ribonuclease Inhibitor 758 901 IPR032675 -
Vian4g02092 927 SMART fbox_2 105 145 IPR001810 GO:0005515
Vian4g02092 927 Gene3D Ribonuclease Inhibitor 664 753 IPR032675 -
Vian4g02092 927 SUPERFAMILY RNI-like 349 576 - -
Vian4g02092 927 SUPERFAMILY RNI-like 128 392 - -
Vian4g02092 927 Gene3D Ribonuclease Inhibitor 515 663 IPR032675 -
Vian4g02092 927 Gene3D Ribonuclease Inhibitor 348 514 IPR032675 -
Vian4g02092 927 Gene3D Ribonuclease Inhibitor 98 347 IPR032675 -
Vian4g02092 927 FunFam F-box/LRR-repeat protein 15 97 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02092 Vian-Chr4 37766663 37772203 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02092 - - vum:124826181 1550.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02092 4 37766663 37772203 Vian4g02092 4 37766663 37772203 ECH