Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02084 ATGGGTAACAGACAAGTATATTTGGCCATGATTATAGCATGGCTTACTTTGTTTGAAGGAAACATGATGCTTGTCAGTGGTGATTTGAATTACAAGGAGGCTCTCACAAAGTCCCTTATCTTCCTCGAGGCACAACGATCAGGGAAACTTCCCTCAAGTAATAGGGTGCCCTGGAGAGGAGACTCAGCACTCGATGATGGAAAACTCGCCAACGTGGACCTTGTCGGAGGATACTATGATGCAGGGGACAATGTGAAATATGGTCTCCCCATGGCTTTCACCGTTACTACGCTGGCATGGGCTGCTATTTTTTACAAGGAAGAATTTAAAGATGCAAAAGAGATGGATCATCTCATCGATGCCATTCGCTGGGGCACTGATTATTTTCTCAAAGCTAGTTCTCGACGCAAAAGATTATACGTAGAGGTAGGGGACGCGGAAGAGGATCACAAGTGTTGGATTCCACCAGAATATATGAAAACACCGAGAACGGTTAAGAAGATTGGTGAAGGTACGGCCGGGAGTGAAATCGCAGCTGAAACTGCAGCTGCAATGGCAGCTTCTTCCATCGTTTTCAGACCCAAAAATCGTAAATATGCTCGTTCTCTTCTCAACAGAGCTAAAACGCTTTTCCATATGGCCAAATCGCATAAAGGAACGTATGATGGAGAGTGTCCCTTCTACTGCTCTTATTCCGGCTATAATTTATATTTCGAGGGTGAAAAGAAGTTCGTGAAATTCAAATACCATGCAGAAAGTTTCATATGCTCTGTCCTTCCAGACAGTCCCTACCACCAGATTACAATGTCTCCTGGTGGCTATATTCATTTACGAGACGGAGCCAACTCGCAGTATGCAACTAGCACCGCTTTCTTGTTCAGTGTATACAGTGATTTGCTTGCCAAACATAAAGACAAAGTTGTTTGTGGTGACAAAACGTTTAGCTCTTCCCGTCTCTTATCTTTCGCTAAGGAACAAATGGATTACATTCTAGGGAAAAACCCACTAGGAAGATCGTACATGGTAGGATTTGGAAAGAACCCACCAACGCAACCTCACCATAGAGGTGCTTCGGTGCCGACACTGAAAAAGGGTGAAGAAGATGTGCCTTGTGGCATGACCTTCTCAAAATGGTTTATGAAAGATGAACCTAACCCTCATGAACTCACCGGTGCTATTGTGGGTGGAGCTGATCGCGAAGACAACTTCAAGGACAAACGTTGGGAGTCACCCTACACTGAACCATGCACCTACGTCAATTCCCTGGCTGCTGGAGTTCTTGCAAAGCTTGCATCTTTGTCTTGA 1305 0.4483 MGNRQVYLAMIIAWLTLFEGNMMLVSGDLNYKEALTKSLIFLEAQRSGKLPSSNRVPWRGDSALDDGKLANVDLVGGYYDAGDNVKYGLPMAFTVTTLAWAAIFYKEEFKDAKEMDHLIDAIRWGTDYFLKASSRRKRLYVEVGDAEEDHKCWIPPEYMKTPRTVKKIGEGTAGSEIAAETAAAMAASSIVFRPKNRKYARSLLNRAKTLFHMAKSHKGTYDGECPFYCSYSGYNLYFEGEKKFVKFKYHAESFICSVLPDSPYHQITMSPGGYIHLRDGANSQYATSTAFLFSVYSDLLAKHKDKVVCGDKTFSSSRLLSFAKEQMDYILGKNPLGRSYMVGFGKNPPTQPHHRGASVPTLKKGEEDVPCGMTFSKWFMKDEPNPHELTGAIVGGADREDNFKDKRWESPYTEPCTYVNSLAAGVLAKLASLS 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02084 434 PANTHER ENDO-1,4-BETA-GLUCANASE 22 235 - -
Vian4g02084 434 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 329 355 IPR018221 -
Vian4g02084 434 Pfam Glycosyl hydrolase family 9 31 234 IPR001701 GO:0004553|GO:0005975
Vian4g02084 434 Pfam Glycosyl hydrolase family 9 244 427 IPR001701 GO:0004553|GO:0005975
Vian4g02084 434 Gene3D - 237 434 IPR012341 GO:0005975
Vian4g02084 434 Gene3D - 26 236 IPR012341 GO:0005975
Vian4g02084 434 SUPERFAMILY Six-hairpin glycosidases 29 431 IPR008928 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02084 Vian-Chr4 37677557 37679680 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02084 21 432 Glycoside Hydrolase AT3G43860 59.827 0.0 550
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02084 K01179 - gmx:100811509 681.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02084 4 37677557 37679680 Vian4g02084 4 37677557 37679680 ECH