Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02072 ATGGCTGCTCCAAACTCTTCCATTAACAACTACCAGCTTCATTATTCCGTCAATGTGCAAGGAACAAAGAATGTCATCGATGCTTGCGTGGAGCAGAAAGTGAAGCGACTCGTTTACACCAGCTCTCCCAGCGTTGTTTTCGATGGCGTTCATGGGATTCATAATGGTGACGAAACAATGCCTTATACACCTTCGCCTAATGATCATTACTCAGCTACGAAAGCCGAGGGTGAGACATTGGTTATTAAAGCTAATGGGACTAATGGGCTCTTAACGTGCTGCATACGCCCTAGCAGCATTTTTGGGCCCGGTGACAGACTGTTGGTGCCTACGCTAGTTGATACTGCCAGAAAAGGGAAATCTAAGTTCCTTATTGGCGATGGGAATAACATTTATGATTTCACGTATGTTGGAAATGTGGCTCATGCCCATATATGTGCAGAACGGGCTCTGGCTTCAGAAGGGCCAGTTTCAGAAAAAGCTGCTGGAGAGGCATATTTCATAACAAATATGGAGCCTATGAAATTTTGGGAGTTCGTGTCAGTGGTATTGGATGGTCTTGGATATGAAAGGCCAAGAATAAAGATCCCTACCGTTGTTATCTTACCCATTGCGCATTTGGTGGAGTGGATATATAGGCTGCTTGGCCCATATGGGATGCCGGTGCCTCAGTTAACCCCTTCAAGGATAAGACTCGTGACCTGCAGCAGAACTTTTGATTGCTCAAAAGCAAAGGATCGCCTTGGCTATGCCCCCATCGTAAAAATGCAGGAGGGCCTACAGAGGACAATTGAATCATATGCACACTTGAAGGCAGAAAATCAACCTAAAACTACAAGAGAAGGTCCCTCAAAAGCTTCCAAATATCTTGGAAGTGGAAGAGTTGCTGACACGTTGCTTTGGAAGGATAAAAAGCAAACTCTCATCACATTGTTTGTCTTCATTGCAATATACTTCAACTTCATTGCATCTGAAAATACCATCATTAGTGCTCTGACAAAGCTTCTATTGTTTGCATCGATCTTTTTATTCATCCATGGCATTCTACCTGCAAAAATGTTGGGATATACTGTTGAGAAAATGCCCAAGTCATGGTTTCACTTGTCAGAAGATAGGTCACATAAATTTGCTCTCTCAGTGGCCTCATCATGGAATGTTGCTGTTAATGTTTTCAAGTCCCTTGCAGAAGGGAATGATTGGGTACTGTTATTAAAGGTTGTTCTCTCTCTGTTCATTCTTAGCTTCCTTGGAGCCTTTTCACTTCAGAACTTGTATACTATAGGAATTACATTTGCATTTATAGCTTTCTATGTATACGAACAGAAGGAGGAAGACATTGATGGCATATTTATAAAAACACATTCTTTTAGTTGCAAATTGAAATCTGATCTCACCAAAAAGTTTCTTTCTTCAAAGAAGATTGATTGA 1428 0.416 MAAPNSSINNYQLHYSVNVQGTKNVIDACVEQKVKRLVYTSSPSVVFDGVHGIHNGDETMPYTPSPNDHYSATKAEGETLVIKANGTNGLLTCCIRPSSIFGPGDRLLVPTLVDTARKGKSKFLIGDGNNIYDFTYVGNVAHAHICAERALASEGPVSEKAAGEAYFITNMEPMKFWEFVSVVLDGLGYERPRIKIPTVVILPIAHLVEWIYRLLGPYGMPVPQLTPSRIRLVTCSRTFDCSKAKDRLGYAPIVKMQEGLQRTIESYAHLKAENQPKTTREGPSKASKYLGSGRVADTLLWKDKKQTLITLFVFIAIYFNFIASENTIISALTKLLLFASIFLFIHGILPAKMLGYTVEKMPKSWFHLSEDRSHKFALSVASSWNVAVNVFKSLAEGNDWVLLLKVVLSLFILSFLGAFSLQNLYTIGITFAFIAFYVYEQKEEDIDGIFIKTHSFSCKLKSDLTKKFLSSKKID 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02072 475 Pfam Reticulon 295 450 IPR003388 -
Vian4g02072 475 Pfam 3-beta hydroxysteroid dehydrogenase/isomerase family 12 196 IPR002225 GO:0003854|GO:0006694|GO:0016616
Vian4g02072 475 PANTHER BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA 2 268 - -
Vian4g02072 475 Gene3D - 1 272 - -
Vian4g02072 475 ProSiteProfiles Reticulon domain profile. 295 447 IPR003388 -
Vian4g02072 475 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 268 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02072 Vian-Chr4 37558148 37576801 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02072 17 284 Lipid Metabolism Gene Families AT2G33630 33.569 2.62e-40 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02072 K23558 - gmx:100816854 848.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02072 4 37558148 37576801 Vian4g02072 4 37558148 37576801 ECH