Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vian4g02071 | ATGAATTGGGACGAGAACGATGAATTTGAGATCCCTCTTACTCAAACGGCAATGGCTTTTCACGAGCTCGATTCCGTCGACAACAATCAACGGCCATTGAAGAAACCAAAACGCAAAACGACGGCGCTTCGTGGCAGTGGCAAGGAGAACGTTGCGGTTCCTGAAGACGATAAGGGTGCTCCACATGTGCCAAAAGTCGCTTCTGTTGTTGATTGGCTTCACGGGCTCGGTTTGGGAAAGTATGAAGTGATTTTCGTTAGGGAAGAAGTTGATTGGAACACCTTGCAATGGCTCACAGAAGAGGTTTACTTATCTTTACGTAAACAATTGGAATTTGTCGTTGTTATTCTCCTCTCCCCCACTGATGGGAAATGTAGTTACTTGCAATTTTGGTGGTCTAGAGTGTTCATCAAGACCGCTTATCTTAATGAGGATCTCTTAAGCATGGGCATCACTGCATTTGGGCCGAGAAAAAAGATTGTGCATGCCCTGTGTGAACTAAGAAAAGGAGATGCCGCTGCAAATGAGAAACAAGGGGGTTCGTTGGCGGAGCCTGTAAGGATTAGAAACCAGAAAGTCAAATTAAAGCGTGACAAATCTGAAAGAAAAACTGACGGCTCTATTAAACCACCAGCAAACAAATTGATTACTGAATATTTTTCGGGATTTGCTTCCAAAGAAAAGAAAGTTCCTGCCTCTCCTGGAGAACAAAAGGAAATGAAAAAAAGTGACTTGGATTCTGGTCGTAAGCACAAATCAAAAAATGTGACAACAAATAGAAAGCTCCGTGATGTTCCCAAATGGTGTTCTGTACAAGGAACGCCTTTCCGAGTGGATGCTTTCAAATATCTCAGAGGAGATTGTTCCCACTGGTTTCTCACACACTTCCACTTGGACCATTATCAAGGTCTTACCAAGTCATTCAATCATGGAAAGATTTATTGCTCCTCCATTACAGCCAGATTAGTAAATACGAACATTGGAATTTCATATGATAAATTACATGTTTTGCCTCTGAACCAAAAGATTGAAATAGCTGGTGTTGATGTGACTTGCTTTGATGCCAACCACTGTCCAGGTTCCATACTCGTACTCTTTCAACCTCCGAATGGTAAGGCTGTGCTGCACACGGGTGATTTCCGGTTTACTGACGAAATGACAATCAATCCTTTACTCAAGATGTGTCCTATCGATACTCTAATTCTTGATACAACATACTGCAATCCACAGTATGACTTTCCGAAACAAGAGGCTGTAATACAATTCGTCATTGATGCCATTCAAGCAGAAACTTTTAATCCCAAGACTCTTTTCCTGATCGGCAGCTATACCATTGGAAAAGAAAGGATATTCTTGGAGGTTGCTCGCGCGCTTAGTAAAAAGGTTCACGTGACTGCGGCAAAGTTGCGTCTTTTAAAATGTTTGGAATTTAAGGAGGAGGATATGCAGTGGTTCACTTCAAATGAACATGAAAGCAACATTCATGTTGCCCCTATGTGGACGCTCGCAAGCTTCAAAAGATTGAAGCACATATCAAGTCAATATAAGGACCGGTACAATCTTATAGTTGCTTTCTCCCCCACTGGTTGGACGTTTGGCAAAGGTAAAAAGAAGTCTCCCGGAAGAAGATGGCAGCAGGGTACTATTATAAGGTATGAAGTACCTTACAGTGAGCATAGCAGCTTTACAGAACTCAAAGAGTTTGTAAAACTTGTATCTCCTAGCAACATTATACCAAGTGTGAATAACGATGGACCAGAATCTTCTGATGCAATGATTTCTCTATTGTTATCTTGA | 1797 | 0.4174 | MNWDENDEFEIPLTQTAMAFHELDSVDNNQRPLKKPKRKTTALRGSGKENVAVPEDDKGAPHVPKVASVVDWLHGLGLGKYEVIFVREEVDWNTLQWLTEEVYLSLRKQLEFVVVILLSPTDGKCSYLQFWWSRVFIKTAYLNEDLLSMGITAFGPRKKIVHALCELRKGDAAANEKQGGSLAEPVRIRNQKVKLKRDKSERKTDGSIKPPANKLITEYFSGFASKEKKVPASPGEQKEMKKSDLDSGRKHKSKNVTTNRKLRDVPKWCSVQGTPFRVDAFKYLRGDCSHWFLTHFHLDHYQGLTKSFNHGKIYCSSITARLVNTNIGISYDKLHVLPLNQKIEIAGVDVTCFDANHCPGSILVLFQPPNGKAVLHTGDFRFTDEMTINPLLKMCPIDTLILDTTYCNPQYDFPKQEAVIQFVIDAIQAETFNPKTLFLIGSYTIGKERIFLEVARALSKKVHVTAAKLRLLKCLEFKEEDMQWFTSNEHESNIHVAPMWTLASFKRLKHISSQYKDRYNLIVAFSPTGWTFGKGKKKSPGRRWQQGTIIRYEVPYSEHSSFTELKEFVKLVSPSNIIPSVNNDGPESSDAMISLLLS | 598 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vian4g02071 | 598 | FunFam | DNA cross-link repair 1A protein | 412 | 559 | - | - | |
| Vian4g02071 | 598 | Pfam | Beta-lactamase superfamily domain | 292 | 411 | IPR001279 | - | |
| Vian4g02071 | 598 | CDD | SNM1A-1C-like_MBL-fold | 252 | 409 | - | - | |
| Vian4g02071 | 598 | Pfam | DNA repair metallo-beta-lactamase | 480 | 584 | IPR011084 | - | |
| Vian4g02071 | 598 | MobiDBLite | consensus disorder prediction | 231 | 258 | - | - | |
| Vian4g02071 | 598 | SUPERFAMILY | SAM/Pointed domain | 65 | 105 | IPR013761 | - | |
| Vian4g02071 | 598 | MobiDBLite | consensus disorder prediction | 193 | 212 | - | - | |
| Vian4g02071 | 598 | MobiDBLite | consensus disorder prediction | 28 | 60 | - | - | |
| Vian4g02071 | 598 | FunFam | DNA ligase 6 | 271 | 431 | - | - | |
| Vian4g02071 | 598 | Gene3D | - | 141 | 173 | IPR013761 | - | |
| Vian4g02071 | 598 | SUPERFAMILY | Metallo-hydrolase/oxidoreductase | 276 | 580 | IPR036866 | - | |
| Vian4g02071 | 598 | Gene3D | - | 412 | 559 | - | - | |
| Vian4g02071 | 598 | PANTHER | DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED | 260 | 592 | - | - | |
| Vian4g02071 | 598 | CDD | SAM_superfamily | 68 | 164 | - | - | |
| Vian4g02071 | 598 | Gene3D | - | 272 | 581 | IPR036866 | - | |
| Vian4g02071 | 598 | MobiDBLite | consensus disorder prediction | 227 | 258 | - | - | |
| Vian4g02071 | 598 | Pfam | SAM domain (Sterile alpha motif) | 65 | 106 | IPR001660 | GO:0005515 | |
| Vian4g02071 | 598 | Gene3D | - | 64 | 107 | IPR013761 | - | |
| Vian4g02071 | 598 | MobiDBLite | consensus disorder prediction | 193 | 208 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vian4g02071 | Vian-Chr4 | 37551682 | 37557546 | Dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vian4g02071 | K15340 | - | gmx:100816321 | 895.19 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vian4g02071 | 4 | 37551682 | 37557546 | Vian4g02071 | 4 | 37551682 | 37557546 | ECH |