Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02065 ATGCTTGTCTCGGGAGTGTCCTCATCATCATGGGATCTCAAATGGCTCCTGCAATTCGTGTTCTCCGCGTTCGTCTTGGCGATGGGGTTGCACGCGCTCGTGAAGAACACCGCCTCCAAGTACTTCGAGGTTGACGCCACTTTCGAAGGGGAACAACACCAGCACCAGCACCAGCACCAGCACCAACGCCACGACGCCATGCCCGGTCTTCTCATGGACGATTCTGTCTGCGCCGTTTGTCGCAACCCCGGCAGCAAGAAGTGTTCGCGATGCAAATCCGTTCGTTACTGCTCACAAGCATGCCAACAGGCACACTGGAAATCGGAGCATAAGATGAGGTGCAAGGAGTTTCAAAAGCAAGGAGTTTCACAAACTGGATTAATTAATCGAGGGTTCAAAGCTTCAGCTGCTGTGAATAGAAGTACAACATCAATTGCTCTCATTCCCGAATGTGGTCGCGGAATTTCTAGGCCTATCAAGCAGCTTAAGGATGTTCTTTTTCCTTATGATGATTTTGTCAATTTGTTTAACTGGGACAAGCCAGGATTTCCTCCATGTGGACTGTTAAATTGTGGAAACAGCTGCTTTGCAAATGTGGTTCTTCAATGTCTCTCTTTCACAAGGCCACTTATTGCCTACCTATTGGAGAAGGGGCACCGCAGTGAATGCTGTCATAATGATTGGTGCTTTCTATGTGAATTTGAAACCCATGTTGAAAAAGTAAGACTAAGTTCTAAAGCGTTTTCTCCGATGAATATTCTGTCTCGTTTGCCTAATATTGGTGGTACACTGGGTTATGGAAGACAAGAGGATGCACACGAGTTCATGAGGTTTTCTATTGATGCCATGCAATCAGTTTGCCTTGATGAATTTGGTGGGGAAAAAGCTGTTCCTCCAAAGCTTCAGGAAACGACTCTTATCCAACACATTTTTGGTGGCCACCTTCAATCTGAGGTGATTTGTACCGAATGTGAGAAGAATTCTAATCAGTATGAAAATATGATGGATTTGACAGTTGAAATTCATGGAGATGCTGCTTCCCTGGAGGAATGTCTGGATCAGTTTACTGCAAAAGAGTGGCTTCATGGGGATAATATGTATAAATGTGACGGGTGCAAGGGCTATGTCAAGGCATGGAAACGTCTCACAGTTAAACGAGCTCCAAATATTCTTACAATTGCCTTGAAAAGATTTCAGAGTGGGAGGTTTGGGAAACTTAACAAGAGAGTAGCTTTCCCAGAGACTTTAGACCTTAGCCCTTACATGAGTGAAGTTGGAGACGGATCTGATATTTATAAGCTATACGCTGTCGTGGTTCATATTGATATGCTAAATGCTTCATTTTTTGGTCATTACATCTGCTACATCAAGGATTTCAGTGGGAACTGGTATAGAATAGATGATTGGAAGGTCGTTGGAGTGGAGTTGGAAGAGGTGCTTTCTCAGAGCGCTTATATGCTGCTGTATAGCAGGGTTCATGCTCGAGCTTCAGGACTTCAAAGTATAGTCTCTTCAGAGACAACAGAAGTGCAGCCTAGCTCAACTGAGCATGCTGAATGCCTCCGGGAATCGAGAACTGAGACTAACAGTGGAGGATGTGAGTCCTCTCCATCTAACAGTAGTCCAGAATTTATGGTTCCCTGCGAAAACATGCCTTTGAGTGAAATGAACTCCGGAGTCAAAAGAGAGCAGTCGAAGGATGTTGAAATTATTGAGGTAAATGGTAATGACTCTGTCTGTAACGGTGTTGAATCATCATATATGCACGGTTCTGAAGCTGACAAAGATATGGTGGACGTAGAAGATTCAGATGGATCAAATACATGCTCATCTGTTTTAGAAGAGATTTCAGTCTGCATGGAAGAGCAAGATGACAGTGATTTGACAAAGTCGAGTCGTCCTTCGTCTTTGCCTAATAAATACTCTTCTGTTTCAGTGGATTATGAAAACGCAAGGGAAGATTCAGATTCAAAGCAGCCGGTAGATACGATTAAAAGCATAGTAACAGCAAATGGCTTTGCAGATCATAGCAACGGTTATGTGAGTGCAAACAAATATGATGATGTCCCAGTGGAAGACGGTGATGATTATTTTTTGACTGAAACAACAACCTCAGCAGTTGTAAAGCATGGGAAATTGGCCTCCGACAAATATGAAGATGACAAAGGAAACAGAGTTAAGGAAGTGGAAATATGA 2196 0.4353 MLVSGVSSSSWDLKWLLQFVFSAFVLAMGLHALVKNTASKYFEVDATFEGEQHQHQHQHQHQRHDAMPGLLMDDSVCAVCRNPGSKKCSRCKSVRYCSQACQQAHWKSEHKMRCKEFQKQGVSQTGLINRGFKASAAVNRSTTSIALIPECGRGISRPIKQLKDVLFPYDDFVNLFNWDKPGFPPCGLLNCGNSCFANVVLQCLSFTRPLIAYLLEKGHRSECCHNDWCFLCEFETHVEKVRLSSKAFSPMNILSRLPNIGGTLGYGRQEDAHEFMRFSIDAMQSVCLDEFGGEKAVPPKLQETTLIQHIFGGHLQSEVICTECEKNSNQYENMMDLTVEIHGDAASLEECLDQFTAKEWLHGDNMYKCDGCKGYVKAWKRLTVKRAPNILTIALKRFQSGRFGKLNKRVAFPETLDLSPYMSEVGDGSDIYKLYAVVVHIDMLNASFFGHYICYIKDFSGNWYRIDDWKVVGVELEEVLSQSAYMLLYSRVHARASGLQSIVSSETTEVQPSSTEHAECLRESRTETNSGGCESSPSNSSPEFMVPCENMPLSEMNSGVKREQSKDVEIIEVNGNDSVCNGVESSYMHGSEADKDMVDVEDSDGSNTCSSVLEEISVCMEEQDDSDLTKSSRPSSLPNKYSSVSVDYENAREDSDSKQPVDTIKSIVTANGFADHSNGYVSANKYDDVPVEDGDDYFLTETTTSAVVKHGKLASDKYEDDKGNRVKEVEI 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02065 731 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 187 202 IPR018200 GO:0004843|GO:0006511
Vian4g02065 731 ProSiteProfiles Zinc finger MYND-type profile. 77 114 IPR002893 -
Vian4g02065 731 MobiDBLite consensus disorder prediction 621 660 - -
Vian4g02065 731 Pfam MYND finger 77 114 IPR002893 -
Vian4g02065 731 SUPERFAMILY HIT/MYND zinc finger-like 74 118 - -
Vian4g02065 731 CDD Peptidase_C19E 185 490 - -
Vian4g02065 731 SUPERFAMILY Cysteine proteinases 182 495 IPR038765 -
Vian4g02065 731 MobiDBLite consensus disorder prediction 506 544 - -
Vian4g02065 731 Gene3D - 71 120 - -
Vian4g02065 731 MobiDBLite consensus disorder prediction 630 646 - -
Vian4g02065 731 Gene3D Cysteine proteinases 182 501 - -
Vian4g02065 731 ProSitePatterns Zinc finger MYND-type signature. 77 114 IPR002893 -
Vian4g02065 731 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 61 493 - -
Vian4g02065 731 Pfam Ubiquitin carboxyl-terminal hydrolase 186 489 IPR001394 GO:0004843|GO:0016579
Vian4g02065 731 FunFam Ubiquitin carboxyl-terminal hydrolase 15 180 500 - -
Vian4g02065 731 MobiDBLite consensus disorder prediction 525 544 - -
Vian4g02065 731 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 186 492 IPR028889 -
Vian4g02065 731 FunFam Ubiquitin carboxyl-terminal hydrolase 15 69 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02065 Vian-Chr4 37485871 37493771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02065 12 539 Miscellaneous Gene Families AT4G31670 61.437 0.0 656
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02065 K11855 - gmx:100810577 1126.69