Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02044 ATGGGTCACATCGGTTCCAGCAAGGATGGCACAAAGGCAGGGATGGCCACCGCGATGATGGATATCGACGGTGACAGCGGCGACGATGACCTCGACCCGACCAACGCCGAAATCCTTGAAGAATTCGGCGGAGAGGACGCATTCCGGTACCACTGCAAGAAGTTCTCGATGCTGTTCTTTGAGGAGTACGGTCTGATCAGCCACCAAATAAACTCCTACAACCACTACGTCAACGTCGGCCTCCAGAGAACTTTCGACGGCTTCGGTGACTTGGTCGTAACGCCCGGCTTCGACCCTTCCAAGAAGGGAGATAACGAGCACTACCGCTACGCCTCCATCAAGTTCGGCAAGGTCAAGCTCGACAAGCCCATGGTCTGGGGCGGTGAGTTAAACAACCAGGAGTTGAAGATGCTTCCGCGACACGCGCGGCTTCAGAGGATGACCTACGCGTCGAAAATGAAAATCTTAGTTAAAGTTCAGGTGTATGTTCCGAAGAAGGTTCGGAGTGATAAGTTCAAGACTGGGAAGGAAGAGTTCCTTGATAAGGAGATTCTGACGGAAGACGAGAGCGAGATCATTATTGGCAAATTGCCTGTCATGGTCAAGTCGGATTTATGTTGGATGAAAGGTGAAAAGGATGATTGTGAATTTGACCATGGAGGTTATTTTCTCATAAAGGGTGCCGAGAAGACTTTTATTGCACAGGAGCAACTGTATTTAAAGAGGCTTTGGGTTATAAACAGTCCAGGTTGGATGATTGCCTACAAGTCACAGATGAAGAGAAATAGGATGGTTATTAAACTGGTAGGCAATTCTAGGAATGAAGGAGGGGAGAATGGAGACATGTTTCTTACTGTGTATTTTTTATCTGTTGAGGTTCCTGTGTGGGTACTATTTTTCGCACTTGGTGTCGGATCTGATAAAGATGTTGTAGATCTCATTGGCTGTGACAATGATGATGTTAGAATTCAGAATATTCTCCTTGCGTCTGTTTGTGATGCTGATGAGAAATGTGGCGCATTTCGGAGTGGTAGGAATGCAGTTCAATATTTAGAGAAGTGTATAAAGGGTGTCCAATTTCCACCTCCTGAGTCTATTGAGGAGTGCCTTGAAATTTATGTCTTTCCTGGAATCAGCGGCTTAAACAGAAAGGCACGTTTCCTTGCATATATGGTGAAGGGTCTCTTGCTGGCTTATACTGGTCGCAGAAAATGCGACAACAGGGATGATTTCCGTAATAAAAGGCTTGAATTGGCCAATGAGCTTCTTGAGCGTGAGTTGAAAGTGCATATAGCACATGTTCGGAAGAGAATGTCCAAGGCACTGCAAAGGGATCTCTATGGAGATAGAGATGTACGCCCCATTGAGTATTATGTTGATGCGTCAATAATTACAAATGGTTTGCAAAGGGCATTTTCAACCGGAGCATGGTCACATCCGTACAAGAGGATGGAAAGGATCTCTGGTGTGGTTGCAACTGTTGGGCGCACCAATCCCTTACAAACCATGGCTGAGCTAAGAAGAGCAAGGCAGCAAGTTCAGTACACGGGAAAAGTTGGGGATGCTAGATATCCGCATCCTTCTCACTGGGGCAAGGTTTGTTTTCTCTCTACCCCAGATGGTGAAAATTGTGGACTAGTAAAAAATATGGCTGTCACCGGACTAGTAAGCACTGATGTATCTAATGCATCTGAATCTATACTGCCTACATTGTTGGATTGTGGGATGGAAGAACTTGTCAATGATACTAAAACTCATCTGGGAAACAAAGACAAAGTCTTCCTAAACGGTGATTGGGTTGGAGTATGCCCTGATTCCAGTTGGTTTGTGGCTGAGCTACGAAGTAAAAGACGAAAAAATGAACTGCCCCATCAGGTGGAAATCAAGAGAGATCAATCTCAACATGAAGTGCGTATATACTCTGATGCAGGAAGGATTCTACGACCTCTTTTAGTAGTAGGTAATCTACTAAAAATTAAAAGATTTAAATCAGAACGTTATTCTTTCCTTACTTTACTGGAAGAAGGTGTTGTTGAGCTAATTGGACCTGAAGAAGAGGAAGACTGCTGTACTGCCTGGGGCGTTCAGTATTTATTTGGAAAAGAGGGGAAAAGATCTGTCAAGTACACTCACTGTGAACTTGATATGTCATTCTTATTGGGTTTAAGTTGTTCACTTGTCCCATTTGCCAATCATGACCATGCAAGGAGGGTGCTCTACCAATCTCAGAAGCACTCCTCACAGGCTATTGGCTTTTCTACTTTAAACCCGAATATTAGAGTTGATACTTTGTCTCATCGGTTACACTATCCCCAAAGGCCCCTTTTTCAAACAATGACTTCAGATTGTCTTGGAAAACCAACTTATCCACTGGGTCAAAGCAAAATACATCCAAAGGCGGAATTCTATAATGGGCAGAACGCAATTGTGGCTGTCAATGTACATCTAGGATACAATCAAGAAGATTCCTTGGTGATGAATCGGGCTTCATTGCAGCGTGGTATGTTCAGATCTGAGCACATAAGGAGTTACAAATCTGAAATTGATAATAAGGATTCTTCAGAGAAGAAGCGCAAACCTGAAGGCAATATAAATTTTGGAAAGCTTCAAAGTAAAATTGGTCGAGTTGATAGCCTTGATGATGATGGTTTTCCATATGTTGGGGCAAATTTGCAAAGTGGTGATATTATTATTGGGCGGTGTGCTGAGTCTGGTGCAGACCATAGTGTGAAGTTAAAGCACACTGAAAGGGGTTATGTACAAAAGGTTGTGCTGTCTTCAAATGACGAGGGGAAAAATTTTGCTGCGGTTTCATTGAGACAGGTTCGAAGTCCAGTTCTTGGTGATAAGTTCTCCAGTATGCATGGACAAAAGGGTGTTTTGGGATTTCTGGAGTGTCAGGAAAATTTTCCTTTCACTAGACAAGGCATTGTTCCTGATATAGTCATTAATCCGCATGCCTTTCCCTCGCGACAAACTCCTGGCCAACTCCTAGAAGCTGCTTTAGGAAAGGGGATTGCTTGTGGTGGTAAACTGAGACATGCTACGCCTTTCTCCACTCCTTCTGTAGATGCCATTACTGACCAGCTTCACAGAGCTGGGTTTTCAAGATGGGGAAACGAGAGGGTATACAATGGAAGGACTGGTGAGATGGTCCGATCACTCATTTTTATGGGACCAACGTTTTACCAACGTCTGCATCATATGTCTGAAGACAAGGTGAAATTCCGCAACACCGGTCCTGTTCACCCTTTGACCCGACAGCCTGTAGCTGACAGAAAACGATTTGGAGGTATCAAGTTTGGTGAAATGGAGCGCGATTGCTTGATAGCTCATGGTGCTTCAGCCAACCTGTATGAACGCCTCTTTACACTCAGTGACTCGTCTCAGATTCACATCTGCACCCAATGCAAAAATGTTTCAAATGTGATCTTGCGGCCAGTCTCTGGTGGCCGGAAAGTACGAGGACCTTATTGCCGCCACTGTGAATCCGCTGATGACATTGTGGTTGCCCATGTTCCATACGGAGCAAAATTGTTATGCCAGGAGCTCTTTAGCATGGGCATAAATCTTAAATTTGAAACCCAACTTTGCTAG 3597 0.444 MGHIGSSKDGTKAGMATAMMDIDGDSGDDDLDPTNAEILEEFGGEDAFRYHCKKFSMLFFEEYGLISHQINSYNHYVNVGLQRTFDGFGDLVVTPGFDPSKKGDNEHYRYASIKFGKVKLDKPMVWGGELNNQELKMLPRHARLQRMTYASKMKILVKVQVYVPKKVRSDKFKTGKEEFLDKEILTEDESEIIIGKLPVMVKSDLCWMKGEKDDCEFDHGGYFLIKGAEKTFIAQEQLYLKRLWVINSPGWMIAYKSQMKRNRMVIKLVGNSRNEGGENGDMFLTVYFLSVEVPVWVLFFALGVGSDKDVVDLIGCDNDDVRIQNILLASVCDADEKCGAFRSGRNAVQYLEKCIKGVQFPPPESIEECLEIYVFPGISGLNRKARFLAYMVKGLLLAYTGRRKCDNRDDFRNKRLELANELLERELKVHIAHVRKRMSKALQRDLYGDRDVRPIEYYVDASIITNGLQRAFSTGAWSHPYKRMERISGVVATVGRTNPLQTMAELRRARQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNMAVTGLVSTDVSNASESILPTLLDCGMEELVNDTKTHLGNKDKVFLNGDWVGVCPDSSWFVAELRSKRRKNELPHQVEIKRDQSQHEVRIYSDAGRILRPLLVVGNLLKIKRFKSERYSFLTLLEEGVVELIGPEEEEDCCTAWGVQYLFGKEGKRSVKYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGFSTLNPNIRVDTLSHRLHYPQRPLFQTMTSDCLGKPTYPLGQSKIHPKAEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLQRGMFRSEHIRSYKSEIDNKDSSEKKRKPEGNINFGKLQSKIGRVDSLDDDGFPYVGANLQSGDIIIGRCAESGADHSVKLKHTERGYVQKVVLSSNDEGKNFAAVSLRQVRSPVLGDKFSSMHGQKGVLGFLECQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGKLRHATPFSTPSVDAITDQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLYERLFTLSDSSQIHICTQCKNVSNVILRPVSGGRKVRGPYCRHCESADDIVVAHVPYGAKLLCQELFSMGINLKFETQLC 1198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02044 1198 Gene3D RNA polymerase Rpb2, domain 2 250 405 IPR037034 GO:0003677|GO:0003899|GO:0006351
Vian4g02044 1198 Gene3D RNA polymerase alpha subunit dimerisation domain 1082 1196 - -
Vian4g02044 1198 Pfam RNA polymerase beta subunit 64 465 IPR007644 GO:0003677|GO:0003899|GO:0006351
Vian4g02044 1198 FunFam DNA-directed RNA polymerase subunit beta 825 944 - -
Vian4g02044 1198 CDD RNA_pol_B_RPB2 65 1194 IPR015712 GO:0003899|GO:0006351|GO:0032549
Vian4g02044 1198 Pfam RNA polymerase Rpb2, domain 2 281 417 IPR007642 GO:0003677|GO:0003899|GO:0006351
Vian4g02044 1198 Gene3D - 755 944 IPR014724 GO:0003899
Vian4g02044 1198 Pfam RNA polymerase Rpb2, domain 4 593 653 IPR007646 GO:0003677|GO:0003899|GO:0006351
Vian4g02044 1198 FunFam DNA-directed RNA polymerase subunit beta 1082 1196 - -
Vian4g02044 1198 Pfam RNA polymerase Rpb2, domain 7 1097 1195 IPR007641 GO:0003677|GO:0003899|GO:0006351
Vian4g02044 1198 Gene3D - 58 240 - -
Vian4g02044 1198 Gene3D - 406 591 - -
Vian4g02044 1198 FunFam DNA-directed RNA polymerase subunit beta 405 596 - -
Vian4g02044 1198 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 50 1195 - -
Vian4g02044 1198 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 58 1192 IPR015712 GO:0003899|GO:0006351|GO:0032549
Vian4g02044 1198 Coils Coil 413 433 - -
Vian4g02044 1198 Gene3D - 725 1081 IPR037033 GO:0003677|GO:0003899|GO:0006351
Vian4g02044 1198 Pfam RNA polymerase Rpb2, domain 3 495 553 IPR007645 GO:0003677|GO:0003899|GO:0006351
Vian4g02044 1198 ProSitePatterns RNA polymerases beta chain signature. 948 960 IPR007121 GO:0003677|GO:0003899|GO:0006351
Vian4g02044 1198 FunFam DNA-directed RNA polymerase subunit beta 57 240 - -
Vian4g02044 1198 Pfam RNA polymerase Rpb2, domain 5 671 715 IPR007647 GO:0006351
Vian4g02044 1198 Pfam RNA polymerase Rpb2, domain 6 724 1095 IPR007120 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02044 Vian-Chr4 37273290 37278487 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02044 K16252 - gmx:100815934 2173.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02044 4 37273290 37278487 Vian4g02044 4 37273290 37278487 ECH