Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02039 ATGAGGCGATACATTCCAGATGAGAGGTTGGTGCCTCCAGTTCGTCGTAGACGGTCGACTGAGCTAGGATTGTTGCCTCCTGCCTCCTGGGGACCCAAAGCGTGTTATAAGCATTGGAGGAGATGGGTGTGGGTGGAACTGAAGAGCTTGGGACCCTTCCACAAACACAAAAAAAGTCAAGTGCCTTGGGGTTTCGGTGTTTTCGATGATGGCGCTCCTATTGACCCCGACGGTGGCCATGGAGATCTCGCCCACCCACCAGCCGTCGTTGTCAAAGACATCGACTTACTGGCAGGGCGTGAAGGAGGAAGCGACTATGAAACACGGGGCAGTGGCTCTGAATATAGGAGATCGAGGAGCTGTGATTCTCTCCGGCGATATGCTTCATTGACGTGGCCACCTTTAGCAACATCCTTGGCGACAGTTTCAGTCAGGAGTTGTGACGCTGATGGCAATACTCGTCAGCGACATAGTCACATTTCTATTAATTCACAAACACAGTATATTCGACAAGAGTCAAAACGAAATATGGTTCCCAATAATTTTCTAGAATATAACATAAGTGAAAAAGGTGAATGTGCAGAAGAAATAAATGATCTACAGGCAGAATTTGAAATTGAGTTACAGCTGTATTTGGATGGACAAGCTGAATTCGAAGATCCAGAGCGCGAGGGAGTCAAGGTTACTGTTAAGGACTGTAGTTCAAAAAGCAGCCGTAGTTCAAGTTTTGGTGAAACAACAATGAAACCTATGGGAGCAAGTTATGACCCTGACCAAAAAACTCTTGACTCCCTCACTTCCAACACCAACCATCATTCTGTTACGGGATATTGTTCAACTAAAAGTCAGCCACAAGAAAGGGGAAACCATCTGAGGCACGGGGCGCACAATAGTGAGAGTGAGTGTAGAAAACCCAGAAACCCTAGCTTTATTCTCGTTCCAGGAAACGCATTGATTGGAATGGGTCACATCGGTTCCAGCAAGGATGGCACAAAGGCAGGGATGGCCACCGCGATGATGGATATCGACGGTGACAGCGGCGACGATGACCTCGACCCGACCAACGCCGAAATCCTTGAAGAATTCGGCGGAGAGGACGCATTCCGGTACCACTGCAAGAAGTTCTCGATGCTGTTCTTTGAGGAGTACGGTCTGATCAGCCACCAAATAAACTCCTACAACCACTACGTCAACGTCGGCCTCCAGAGAACTTTCGACGGCTTCGGTGACTTGGTCGTAACGCCCGGCTTCGACCCTTCCAAGAAGGGAGATAACGAGCACTACCGCTACGCCTCCATCAAGTTCGGCAAGGTCAAGCTCGACAAGCCCATGGTCTGGGGCGGTGAGTTAAACAACCAGGAGTTGAAGATGCTTCCGCGACACGCGCGGCTTCAGAGGATGACCTACGCGTCGAAAATGAAAATCTTAGTTAAAGTTCAGGTGTATGTTCCGAAGAAGATTCGGAGTGATAAGTTCAAGACTGGGAAGGAAGAGTTCCTTGATAAGGAGATTCTGACGGAAGACGAGAGCGAGATCATCATTGGCAAATTGCCTGTCATGGTCAAGTCGGATTTATGTTGGATGAAAGGTGAAAAGGATGATTGTGAATTTGACCATGGAGGTTATTTTCTCATAAAGGGTGCCGAGAAGACTTTTATTGCACAGGAGCAACTGTATTTAAAGAGGTTTTGGGTTATAAACAGTCCAGGTTGGATGATTGCCTACAAGTCACAGATGAAGAGAAATAGGATGGTTATTAAACTGGTAGGCAATTCTAGGAATGAAGGAGGGGAGAATGGAGACATGTTTCTTACTGTGTATTTTTTATCTGTTGAGGTTCCTGTGTGGGTACTATTTTTCGCACTTGGTGTCGGATCTGATAAAGATGTTGTAGATCTCATTGGCTGTGACAATGATGATGTTAGAATTCAGAATATTCTCCTTGCGTCTGATTGTGATGCTGATAAGAAATGTGGCGCATTTCGGAGTGGTAGGAATGCAGTTCAATATTTAGAGAAGTGTATGAAGGGTGTCCAATTTCCACCTCCTGAGTCTATTGAGGAGTGCCTTGAAATTTATGTCTTTCCTGGAATCAGCGGCTTAAACAGAAAGGCACGTTTCCTTGCATATATGGTGAAGGGTCTCTTGCTGGCTGGCCGCAGAAAATGCGACAACAGGGATGATTTCCGTAATAAGAGGCTTGAATTGGCCAATGAACTTCTTGAGCGTGAGTTGAAAGTGCATATAGCACATGTTCGAAAGAGAATGTCCAAGGCACTGCAAAGGGATCTCTATGGAGATAGAGATCATGGTCACATCCGTACAAGAGGATGGAAAGGATCTCTGGTGTGGTTGCAACTGTTGGGCACTAATCCCTTACAAACCATGGCTGAGCTAAGAAGAGCAAGCCAGCAAGTTCAGTACATGGGAAAAGTTGGGGATGCTAGATATCCGCATCCTTCTCACTGGGGCAAGGTTTGTTTTCTCTCTACCCCAGATGGTGAAAATTGTGGACTAGTAAAAAATATGGCTGTCACGGGACTAGTAAGCACTGATGTATCTAATGCATCTGAATCTATACTGCCTACATTGTTGGATTGTGGGAAACAAAGACAAAGTCTTCCTAAACGGTGA 2634 0.4624 MRRYIPDERLVPPVRRRRSTELGLLPPASWGPKACYKHWRRWVWVELKSLGPFHKHKKSQVPWGFGVFDDGAPIDPDGGHGDLAHPPAVVVKDIDLLAGREGGSDYETRGSGSEYRRSRSCDSLRRYASLTWPPLATSLATVSVRSCDADGNTRQRHSHISINSQTQYIRQESKRNMVPNNFLEYNISEKGECAEEINDLQAEFEIELQLYLDGQAEFEDPEREGVKVTVKDCSSKSSRSSSFGETTMKPMGASYDPDQKTLDSLTSNTNHHSVTGYCSTKSQPQERGNHLRHGAHNSESECRKPRNPSFILVPGNALIGMGHIGSSKDGTKAGMATAMMDIDGDSGDDDLDPTNAEILEEFGGEDAFRYHCKKFSMLFFEEYGLISHQINSYNHYVNVGLQRTFDGFGDLVVTPGFDPSKKGDNEHYRYASIKFGKVKLDKPMVWGGELNNQELKMLPRHARLQRMTYASKMKILVKVQVYVPKKIRSDKFKTGKEEFLDKEILTEDESEIIIGKLPVMVKSDLCWMKGEKDDCEFDHGGYFLIKGAEKTFIAQEQLYLKRFWVINSPGWMIAYKSQMKRNRMVIKLVGNSRNEGGENGDMFLTVYFLSVEVPVWVLFFALGVGSDKDVVDLIGCDNDDVRIQNILLASDCDADKKCGAFRSGRNAVQYLEKCMKGVQFPPPESIEECLEIYVFPGISGLNRKARFLAYMVKGLLLAGRRKCDNRDDFRNKRLELANELLERELKVHIAHVRKRMSKALQRDLYGDRDHGHIRTRGWKGSLVWLQLLGTNPLQTMAELRRASQQVQYMGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNMAVTGLVSTDVSNASESILPTLLDCGKQRQSLPKR 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02039 877 FunFam DNA-directed RNA polymerase subunit beta 377 560 - -
Vian4g02039 877 MobiDBLite consensus disorder prediction 231 248 - -
Vian4g02039 877 Gene3D RNA polymerase Rpb2, domain 2 570 724 IPR037034 GO:0003677|GO:0003899|GO:0006351
Vian4g02039 877 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 378 862 IPR015712 GO:0003899|GO:0006351|GO:0032549
Vian4g02039 877 MobiDBLite consensus disorder prediction 286 303 - -
Vian4g02039 877 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 370 866 - -
Vian4g02039 877 Pfam RNA polymerase Rpb2, domain 3 790 846 IPR007645 GO:0003677|GO:0003899|GO:0006351
Vian4g02039 877 Pfam RNA polymerase Rpb2, domain 2 600 735 IPR007642 GO:0003677|GO:0003899|GO:0006351
Vian4g02039 877 Coils Coil 731 751 - -
Vian4g02039 877 Pfam RNA polymerase beta subunit 384 765 IPR007644 GO:0003677|GO:0003899|GO:0006351
Vian4g02039 877 Gene3D - 725 873 - -
Vian4g02039 877 Gene3D - 378 560 - -
Vian4g02039 877 MobiDBLite consensus disorder prediction 259 285 - -
Vian4g02039 877 MobiDBLite consensus disorder prediction 220 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02039 Vian-Chr4 37108698 37120454 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02039 K16252 - gmx:100815934 868.226