Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02026 ATGGCTACAAGACGAACTCCAACGCTAGCCAAATCGCTTTTGGCTGCCGTAACTGCTTCTAGAAACTGTCGCTCCCGGTCTGCACGACGACTCTTCTCCGCGATCACTCGTGCTTCGGAGAATTCTCCCAATGTCCTTTCTCGGTCTCAGATTGTCGACGCACTTGCAGCCAATAATGTCGCCTCCGCCAAATTCCTCTCCCTCTCTTTCACCCGCAGCTTCCACGCCACTAATGCGTCTCTCCGCTCTGCTGCAAGCTCTCAGGTAGCGCAGACTGAATTCACCGATATGGCATGGGAGGGGATTCTTGGTGCTGTTGATGCGGCTCGGGTTAGTAAACAGCAAATTGTGGAGTCTGAGCACTTAATGAAAGCCCTTTTGGAGCAAAAGGATGGCTTGGCGCGAAGGGTATTTACTAAGGCAGGATTGGACAACACGTCTGTTCTACAGGCTACTGATGATTTTATAGCGAAGCAGCCTAAGGTTACTGGCGACACTACTGGACCTGTTGTAGGCTCACATCTTAGCTCCCTCTTGGACAATTCACGAAAGTACAAGAAAGAAATGGGGGATGAGTATGTGTCTGTGGAGCATCTTTTGCTTGCATTTCATTCAGATAAGAGGTTTGGGCAGCAGTTGTTTAAGAATCTTCAGCTTAGCGAGACGACTTTGAAGGATGCAATACAAGCTGTTCGTGGAAGTCAAAGAGTGACTGATCAAAATTTTTATCTTACATTATTTTTCTTATTTGGAAATAACTGTGTAGATCCGGAGGGGAAATATGAGGCATTGGATAAGTATGGGAACGATCTGACTGAACTTGCTAGGCGTGGCAAACTTGATCCTGTCATAGGTCGAGATGATGAAATTCGGCGCTGTATCCAGATATTATCGAGGAGAACAAAAAACAATCCAGTTATTATTGGTGAACCCGGTGTGGGCAAAACTGCAATTGCTGAAGGATTAGCTCAACGTATTGTGCGTGGTGATGTTCCTGAGCCATTGATGAACAGAAAGTTGATCTCCCTTGACATGGGTTCATTGCTTGCTGGGGCCAAGTATCGAGGAGATTTTGAAGAAAGGTTGAAAGCTGTCCTAAAGGAAGTTACAGCATCAAATGGGCAAATAATTTTGTTTATTGATGAAATTCATACTGTTGTAGGTGCAGGGGCTACAAGTGGTGCAATGGATGCTGGGAACTTGTTGAAGCCAATGCTTGGAAGAGGTGAACTTAGATGTATAGGAGCAACTACATTGAATGAGTATAGAAAATATATTGAAAAAGATCCTGCTCTTGAGCGAAGATTTCAGCAAGTGTTTTGCAGTCAACCATCTGTTGAAGATACAATATCCATTCTTCGTGGGTTGCGTGAACGCTATGAATTGCATCACGGAGTCAAAATATCAGATAGTGCACTTGTTTCAGCTGCAGTTCTTGCGGATCGATACATTACAGAGCGTTTTTTACCTGACAAAGCCATTGATCTTGTGGATGAAGCTGCTGCGAAGCTGAAGATGGAGATAACCTCTAAGCCTACTGAATTGGATGAGATAGACAGGGCAATATTGAAATTGGAGATGGAAAAGCTCTCTTTGAAAAATGACACTGACAAGGCATCTAAAGAAAGATTAAGTAAGCTTGAAAATGATTTGAGTTTACTTAAACAGAAGCAAAAAGAATTGGCAGAACAATGGGACAATGAAAAAGTTTTTATGACACGAATAAGGTCAATCAAAGAAGAGATTGATAGAGTCAACCTAGAGATGGAAGCTGCTGAACGTGATTATGACCTGAACCGCGCTGCTGAGCTCAAGTATGGAACTTTGATGTCCCTTCAGCGCCAAGTAGAAGAAGCTGAAAAGAACCTAACTGACTTCCGAAATTCTGGAAAATCTTTGCTTCGAGAAGAGGTCACTGACCTTGATATTACTGAGATTGTTAGCAAATGGACTGGTATACCATTATCAAACCTCCAACAAACAGAAAGAGAAAAATTAGTCTTGCTGGAACAGGTTCTTCACAAGAGAGTGGTTGGTCAGGATATGGCAGTAAAATCTGTGGCTGATGCAATTCGCCGTTCAAGAGCTGGATTGTCTGATCCAAACCGGCCAATTGCAAGCTTCATGTTTATGGGTCCAACTGGTGTTGGCAAAACTGAGCTTGCCAAGGCTTTGGCTGGTTACTTGTTTAACACTGAAAATGCTCTTGTTAGAATTGATATGAGCGAGTACATGGAGAAACATGCTGTTTCACGATTAGTTGGAGCCCCTCCTGGTTATGTTGGTTACGAAGAAGGTGGTCAGCTGACTGAAGTGGTCCGGAGAAGACCCTACTCTGTGGTCCTATTTGATGAAATAGAGAAGGCACATCACGATGTCTTCAACATATTGTTACAGTTGTTGGATGATGGAAGGATTACTGATTCCCAAGGAAGGACTGTTAGCTTTACGAATTGTGTTGTGATTATGACTTCAAACATTGGTTCACATTATATACTTGAAACTCTTCGTAGCACACAAGATGATAAAACTGCAGTCTATGATCAGATGAAGAGACAAGTTGTTGAGTTGGCTAGGCAAACATTTCGTCCAGAGTTTATGAATCGCATTGACGAATATATTGTGTTTCAGCCTCTGGATTCTGAACAGATAAGCAAAATAGTGGAGCTCCAGATGGAACGAGTGAAAAACAGGCTTAAGCAAAAGAAAATTGATCTCCATTACACAGAAGAAGCTGTTAAACATCTTGGTGTACTGGGTTTTGATCCAAATTTTGGTGCAAGACCAGTTAAAAGAGTGATACAACAGTTAGTTGAAAATGAAATTGCAATGGGAGTTCTAAGGGGAGATTTCAAAGAAGAGGACTCAATCATTGTGGATGCTGATGTGACTCCATCTGCCAAAGAACGTTCTCTGAATAGACTGCTTATTAAGAAGTTGGACAACCCTGTTGCGGATGCCATGGTTGTCAATCACTAA 2979 0.4263 MATRRTPTLAKSLLAAVTASRNCRSRSARRLFSAITRASENSPNVLSRSQIVDALAANNVASAKFLSLSFTRSFHATNASLRSAASSQVAQTEFTDMAWEGILGAVDAARVSKQQIVESEHLMKALLEQKDGLARRVFTKAGLDNTSVLQATDDFIAKQPKVTGDTTGPVVGSHLSSLLDNSRKYKKEMGDEYVSVEHLLLAFHSDKRFGQQLFKNLQLSETTLKDAIQAVRGSQRVTDQNFYLTLFFLFGNNCVDPEGKYEALDKYGNDLTELARRGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPEPLMNRKLISLDMGSLLAGAKYRGDFEERLKAVLKEVTASNGQIILFIDEIHTVVGAGATSGAMDAGNLLKPMLGRGELRCIGATTLNEYRKYIEKDPALERRFQQVFCSQPSVEDTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAAAKLKMEITSKPTELDEIDRAILKLEMEKLSLKNDTDKASKERLSKLENDLSLLKQKQKELAEQWDNEKVFMTRIRSIKEEIDRVNLEMEAAERDYDLNRAAELKYGTLMSLQRQVEEAEKNLTDFRNSGKSLLREEVTDLDITEIVSKWTGIPLSNLQQTEREKLVLLEQVLHKRVVGQDMAVKSVADAIRRSRAGLSDPNRPIASFMFMGPTGVGKTELAKALAGYLFNTENALVRIDMSEYMEKHAVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHHDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLRSTQDDKTAVYDQMKRQVVELARQTFRPEFMNRIDEYIVFQPLDSEQISKIVELQMERVKNRLKQKKIDLHYTEEAVKHLGVLGFDPNFGARPVKRVIQQLVENEIAMGVLRGDFKEEDSIIVDADVTPSAKERSLNRLLIKKLDNPVADAMVVNH 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02026 992 SMART AAA_5 704 861 IPR003593 GO:0016887
Vian4g02026 992 SMART AAA_5 301 445 IPR003593 GO:0016887
Vian4g02026 992 Pfam AAA lid domain 445 547 IPR041546 -
Vian4g02026 992 ProSiteProfiles Clp repeat (R) domain profile. 89 234 IPR004176 -
Vian4g02026 992 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 262 652 IPR027417 -
Vian4g02026 992 Pfam ATPase family associated with various cellular activities (AAA) 307 440 IPR003959 GO:0005524|GO:0016887
Vian4g02026 992 Gene3D - 91 238 IPR036628 -
Vian4g02026 992 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 653 959 IPR027417 -
Vian4g02026 992 SUPERFAMILY Double Clp-N motif 93 241 IPR036628 -
Vian4g02026 992 ProSitePatterns Chaperonins clpA/B signature 2. 738 756 IPR028299 -
Vian4g02026 992 Gene3D - 656 877 IPR027417 -
Vian4g02026 992 FunFam Chaperone protein ClpB3, chloroplastic 90 236 - -
Vian4g02026 992 CDD AAA 284 441 - -
Vian4g02026 992 FunFam ATP-dependent Clp protease subunit 657 877 - -
Vian4g02026 992 Coils Coil 515 535 - -
Vian4g02026 992 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 753 771 IPR001270 GO:0005524
Vian4g02026 992 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 708 726 IPR001270 GO:0005524
Vian4g02026 992 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 782 800 IPR001270 GO:0005524
Vian4g02026 992 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 815 829 IPR001270 GO:0005524
Vian4g02026 992 PANTHER ATP-DEPENDENT CLP PROTEASE 95 969 - -
Vian4g02026 992 Gene3D - 254 445 IPR027417 -
Vian4g02026 992 Gene3D - 879 974 - -
Vian4g02026 992 FunFam ATP-dependent chaperone ClpB 446 651 - -
Vian4g02026 992 FunFam Chaperone clpB 1, putative 252 445 - -
Vian4g02026 992 NCBIfam ATP-dependent chaperone ClpB 94 962 IPR017730 GO:0005737|GO:0009408|GO:0042026
Vian4g02026 992 Pfam C-terminal, D2-small domain, of ClpB protein 879 959 IPR019489 -
Vian4g02026 992 ProSitePatterns Chaperonins clpA/B signature 1. 397 409 IPR018368 GO:0005524
Vian4g02026 992 Coils Coil 537 564 - -
Vian4g02026 992 SMART ClpB_D2_small_2 879 965 IPR019489 -
Vian4g02026 992 FunFam ATP-dependent chaperone ClpB 879 970 - -
Vian4g02026 992 Pfam AAA domain (Cdc48 subfamily) 703 872 IPR003959 GO:0005524|GO:0016887
Vian4g02026 992 Gene3D - 446 651 IPR027417 -
Vian4g02026 992 Pfam Clp amino terminal domain, pathogenicity island component 184 233 IPR004176 -
Vian4g02026 992 Pfam Clp amino terminal domain, pathogenicity island component 105 156 IPR004176 -
Vian4g02026 992 CDD RecA-like_ClpB_Hsp104-like 665 876 - -
Vian4g02026 992 Coils Coil 602 636 - -
Vian4g02026 992 Coils Coil 575 595 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02026 Vian-Chr4 36951384 36964127 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02026 K03695 - gmx:100782242 1755.73