Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02011 ATGGCTGCCCAGATCAATGTTTCTCAGGATGTTGGGCTCCATGCTAGGCATGTCAGTACTGTGTCCACAGTGGATAGTGAACTTAACGATGAATCTGGGAATCCAATATGGAAAAATAGAGTGGAAAGTTGGAAGGAAAAGGATAAAAAGAACAAGAAGAAAAAGTCTGCACCTAAGGCTGAAAATGGGGCACCAATTCCTCAAGAACAGCAGATGGAAGAAATACAGTCCTCAGAGGCTGCAGCTGCTGAGCCACTTTCAGTGATTATTCCAATCCCAAAAACGAGAATAACACCATACCGAATTGTGATAGTCGTGCGACTTATAATCTTGGGTCTTTTCTTCCATTATCGAGTTACAAATCCTGTTGACAGTGCTTTTGGTCTGTGGTTGACGTCCATCATCTGTGAGATCTGGTTTGCATTTTCCTGGGTATTAGATCAGTTCCCTAAATGGTATCCCATCAACAGGGACACTTTTATTGACAGGCTTTCTGCAAGATATGAAAGGCCTGGTGAACCCTCTCAGCTTGCTGCTGTGGATTTCTTTGTCAGTACAGTCGATCCTCTAAAAGAACCTCCATTGATCACTGCTAACACAGTGCTTTCAATTCTTGCTGTGGACTACCCTGTGGATAAAGTATCCTGTTATGTGTCTGATGATGGTGCTGCAATGCTGACATTTGAGTCCCTTGTGGAAACAGCTGACTTTGCAAGAAAATGGATTCCATTTTGCAAAAAGTTTGCAATTGAACCACGTGCACCTGAGTTCTACTTCTCTCAGAAGATTGACTACCTTAAGGACAAAGTACAACCTTCTTTTGTGAAGGAACGTAGAGCAATGAAGAGAGACTATGAAGAGTTTAAAGTGAGAATTAATGCTTTGGTAGCAAAGGCTCAGAAAACACCAGATGAAGGATGGACTATGCAAGATGGAACCTCATGGCCAGGAAATAATTCACGCGATCACCCTGGCATGATTCAGGTTTTCCTTGGACACAGTGGTGCCCAGGACATAGAAGGAAATGAACTTCCCAGATTGGTGTATGTTTCCAGAGAGAAAAGGCCAGGTTACCAACACCACAAAAAGGCTGGTGCTGAAAATGCACTGGTGAGGGTGTCTGCAGTTCTCACAAATGCTCCCTTTATTCTCAATCTTGATTGTGATCATTATGTGAACAATAGCAAGGCTGTTCGGGAAGCAATGTGTTTTCTGATGGATCCAGTAGTTGGTAGAGATTTGTGCTATGTGCAGTTTCCCCAGAGATTTGATGGTATTGATCGTAGTGATCGATATGCCAATCGCAACACAGTTTTCTTTGATGTTAACATGAAAGGTCTTGATGGCATTCAAGGACCTGTGTATGTGGGAACTGGATGTGTTTTCAATAGACAAGCACTTTATGGTTACAGCCCACCTTCCATGCCCAAATTACCAAAATCATCATCATGTTGTTGCTGCCCCTCAAAGAAGCAAACCAAAGATGTCTCGGAGCTTTATAGAGATGCAAAGAGGGAAGAACTCGATGCGGCCATTTTTAATCTTAGGGAGATTGACAATTATGATGAATATGAGAGGTCAATGCTGATTTCACAAATGAGCTTTGAGAAAACATTTGGTTTGTCCACTGTTTTCATTGAATCTACACTAATGGAAAGTGGAGGCCTGCCAGAATCTGCTGATCCATCAATGTTGATCAAAGAGGCCATTCATGTCATTAGCTGTGGATACGAAGAGAAGACTGCATGGGGAAAAGAGATTGGATGGATCTATGGTTCAGTGACTGAGGATATCTTAACGGGTTTCAAGATGCAATGCCGGGGATGGAGGTCAGTTTACTGCATGCCCTTAAGGCCTGCATTCAAAGGATCAGCACCAATAAATCTTTCTGATCGGTTGCACCAAGTTCTTCGATGGGCCCTTGGATCAGTTGAAATCTTCTTCAGTAGACATTGTCCCCTCTGGTATGGTTTTGCAGGAGGTCGCCTCAAATGGCTGCAGAGACTTGCTTACATAAACACCATTGTATACCCATTTACATCCCTTCCTCTCGTTGCCTATTGCACTTTGCCTGCAATTTGCCTTCTCACAGGAAAATTCATCATACCAACGCTTTCGAACCTTGCAAGTGCCCTCTTTCTTGGACTTTTCCTGTCCATTATAATCACTAGTGTGCTTGAGCTGCGGTGGAGTGGTGTGACCATTGAAGCTTTGTGGCGTAATGAGCAGTTCTGGGTGATTGGAGGAGTTTCAGCCCATCTGTTTGCTGTGTTCCAAGGATTTCTGAAGATGTTGGCTGGTGTTGACACTAACTTCACTGTCACCGCCAAAGCTGCTGAAGACACTGAGTTTGGTGAACTATATATGATCAAGTGGACCACACTCTTAATTCCTCCAACCACCCTTATCGTTATTAACATAGTTGGTGTTGTGGCTGGTTTTTCTGATGCACTTAATGGAGGATATGAGTCTTGGGGACCACTTTTTGGAAAGGTTTTCTTTGCCTTTTGGGTTATTTTCCATCTCTATCCATTCCTCAAGGGTCTCATGGGTCGCCAAAATCGTACTCCAACAGTTGTTATTCTGTGGTCAGTGTTGTTGGCGTCTGTCTTCTCTCTGGTGTGGGTGAAGATTAACCCTTTTATCAGCAGAGCTGACAGTTCAAGCATCTCCCAGACCTGCATTTCAATAGATTGTTAA 2700 0.4333 MAAQINVSQDVGLHARHVSTVSTVDSELNDESGNPIWKNRVESWKEKDKKNKKKKSAPKAENGAPIPQEQQMEEIQSSEAAAAEPLSVIIPIPKTRITPYRIVIVVRLIILGLFFHYRVTNPVDSAFGLWLTSIICEIWFAFSWVLDQFPKWYPINRDTFIDRLSARYERPGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFESLVETADFARKWIPFCKKFAIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRDYEEFKVRINALVAKAQKTPDEGWTMQDGTSWPGNNSRDHPGMIQVFLGHSGAQDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPFILNLDCDHYVNNSKAVREAMCFLMDPVVGRDLCYVQFPQRFDGIDRSDRYANRNTVFFDVNMKGLDGIQGPVYVGTGCVFNRQALYGYSPPSMPKLPKSSSCCCCPSKKQTKDVSELYRDAKREELDAAIFNLREIDNYDEYERSMLISQMSFEKTFGLSTVFIESTLMESGGLPESADPSMLIKEAIHVISCGYEEKTAWGKEIGWIYGSVTEDILTGFKMQCRGWRSVYCMPLRPAFKGSAPINLSDRLHQVLRWALGSVEIFFSRHCPLWYGFAGGRLKWLQRLAYINTIVYPFTSLPLVAYCTLPAICLLTGKFIIPTLSNLASALFLGLFLSIIITSVLELRWSGVTIEALWRNEQFWVIGGVSAHLFAVFQGFLKMLAGVDTNFTVTAKAAEDTEFGELYMIKWTTLLIPPTTLIVINIVGVVAGFSDALNGGYESWGPLFGKVFFAFWVIFHLYPFLKGLMGRQNRTPTVVILWSVLLASVFSLVWVKINPFISRADSSSISQTCISIDC 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02011 899 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 324 471 IPR029044 -
Vian4g02011 899 Pfam Cellulose synthase 180 890 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vian4g02011 899 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 84 864 - -
Vian4g02011 899 MobiDBLite consensus disorder prediction 40 59 - -
Vian4g02011 899 SUPERFAMILY Nucleotide-diphospho-sugar transferases 194 692 IPR029044 -
Vian4g02011 899 MobiDBLite consensus disorder prediction 39 77 - -
Vian4g02011 899 FunFam Cellulose synthase 297 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02011 Vian-Chr4 36757960 36762753 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02011 6 899 Glycosyltransferase AT4G18780 84.275 0.0 1576
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02011 K10999 - gmx:100806522 1698.72