Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01992 ATGGGTACTGTCTCTCTTCTTAAGTGCTACAGACCCTTATTCTCTACGCTTTTTCCTCGCTCCCCTCCATCAACACCCCACGCAGCCATCTTCAGGAGGAAGAACCCGCGGTCCTTCTGCGCCTGCTCGTCTCCGCCGTTGACGGCTGAGAAGGATTGCGGCAAATCCGACGCCGAGGGTTTCACCCTGAAGAAAACTGCGCCGGAGGTATGGCTGCACAACACCATGAGTAAAACAAAACAACTCTTCAAACCCAAAGTGGAATCCAAAGTGGGAATGTACGTGTGTGGCGTCACCGCCTACGATCTCAGCCATATTGGACATGCACGCGTGTATATCAATTTCGACCTTCTTTACAGATACTTTAAGCATCTGGGATTTGAAGTCTGTTATGTTCGCAATTTTACTGACGTTGATGACAAGATAATTGCTAGAGCGAAAGAGTTAGGACAAGATCCAATCAGTTTGAGCCGGCACTATTGTGAAGAATTCTGTCGAGACATGATAACTCTTAATTGTCTGCCTCCCTCTGTGGAACCAAAGGTCTCGGGGCACATGCCCCAAATCATTGATATGATTGAGAAGATTCTTAATAACGGGTATGCCTACATTGTTGATGGGGATGTATACTTTAATGTAGAAAAATTTCCAGAATATGGGAAATTATCCAGTCGAGATCTAGAAGATAACCGAGCTGGTGAAAGGGTTGCAGTTGACTTAAGGAAGAAAAACCCTGCTGATTTTGCTCTGTGGAAGTCTTCAAAGCCTGGGGAGCCATTTTGGGAAAGTCCCTGGGGTCCTGGAAGACCTGGGTGGCATATTGAATGCAGTGCCATGAGTGCAGCTTATCTTGGTTACTCTTTTGACATCCACGGTGGAGGAATTGATCTTGTGTTTCCTCACCATGAGAATGAAATTGCTCAGAGTTGTGCTGCTTGCAAGAAAAGTGATATAAGCGTATGGATGCACAATGGTTTTGTTACAATTGATTCTGTGAAGATGTCAAAATCTTTGGGAAATTTTTTCACAATACGTCAGGTTATAGACATTTACCATCCACTGGCTTTGAGATATTTTTTGATGAGTGCTCATTATCGATCTCCTGTTAACTACTCAAATATACAACTTGAAAGTGCTTCAGACCGTATCTTTTATATATATGAGACATTACACGAATGCAAAAGCTTCTTGAATCAGTATGATCAGACAACCAGAAAAGATTCCATCCCACCAGATACATTGAATATTATTGATAAGTTCCATGATGTTTTTCTGACCTCAATGTCGGATGATCTTCACACGCCAGTTGTATTGGCTGGAATGTCTGATCCCTTAAAATCAATAAATGATTTGTTGCATACCCGTAAGGTTAATGTCAGTCGATCAACCTCTGGTTTTGGTCATACTTTTTCTGTGCTAGAAATGCATCTTCGAAATATCTTGGGGATGGGGGAAAAACAACAATTTCGAATAGAGTCACTTACAGCTTTAGAGAAGAGCATCGGGGATGTCCTTACTGTTTTAGGACTAATGCCTGCAAGTTACTATGAGGTTTTGCAGCAGCTTAAGGAAAAAGCTTTAAAGCGTGCAAACTTGACAGAAGAGAAAGTGTTGGAGAAAATAGAAGAACGGGCTGCTGCTAGAATAGAAAAGGACTATGCTAAATCAGATGCAATTAGGAAGGATTTGGCTATTCTTGGTATTACTCTTATGGACAGTCCAGATGGCACAAGTTGGAGGCCTACCATTCCTCTTCCACTTCAAGAGCTTCTTTAG 1776 0.424 MGTVSLLKCYRPLFSTLFPRSPPSTPHAAIFRRKNPRSFCACSSPPLTAEKDCGKSDAEGFTLKKTAPEVWLHNTMSKTKQLFKPKVESKVGMYVCGVTAYDLSHIGHARVYINFDLLYRYFKHLGFEVCYVRNFTDVDDKIIARAKELGQDPISLSRHYCEEFCRDMITLNCLPPSVEPKVSGHMPQIIDMIEKILNNGYAYIVDGDVYFNVEKFPEYGKLSSRDLEDNRAGERVAVDLRKKNPADFALWKSSKPGEPFWESPWGPGRPGWHIECSAMSAAYLGYSFDIHGGGIDLVFPHHENEIAQSCAACKKSDISVWMHNGFVTIDSVKMSKSLGNFFTIRQVIDIYHPLALRYFLMSAHYRSPVNYSNIQLESASDRIFYIYETLHECKSFLNQYDQTTRKDSIPPDTLNIIDKFHDVFLTSMSDDLHTPVVLAGMSDPLKSINDLLHTRKVNVSRSTSGFGHTFSVLEMHLRNILGMGEKQQFRIESLTALEKSIGDVLTVLGLMPASYYEVLQQLKEKALKRANLTEEKVLEKIEERAAARIEKDYAKSDAIRKDLAILGITLMDSPDGTSWRPTIPLPLQELL 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01992 591 CDD CysRS_core 71 372 IPR032678 -
Vian4g01992 591 FunFam Cysteine--tRNA ligase 69 370 - -
Vian4g01992 591 PANTHER CYSTEINYL-TRNA SYNTHETASE 66 585 IPR024909 -
Vian4g01992 591 NCBIfam cysteine--tRNA ligase 72 580 IPR015803 GO:0004817|GO:0005524|GO:0006423
Vian4g01992 591 Gene3D HUPs 55 372 IPR014729 -
Vian4g01992 591 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 406 581 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vian4g01992 591 FunFam Cysteine--tRNA ligase CPS1, chloroplastic/mitochondrial 372 581 - -
Vian4g01992 591 Hamap Cysteine--tRNA ligase [cysS]. 70 582 IPR015803 GO:0004817|GO:0005524|GO:0006423
Vian4g01992 591 Gene3D - 374 581 - -
Vian4g01992 591 Pfam tRNA synthetases class I (C) catalytic domain 83 379 IPR032678 -
Vian4g01992 591 SUPERFAMILY Nucleotidylyl transferase 70 376 - -
Vian4g01992 591 Coils Coil 516 536 - -
Vian4g01992 591 PRINTS Cysteinyl-tRNA synthetase signature 93 104 IPR024909 -
Vian4g01992 591 PRINTS Cysteinyl-tRNA synthetase signature 129 138 IPR024909 -
Vian4g01992 591 PRINTS Cysteinyl-tRNA synthetase signature 289 310 IPR024909 -
Vian4g01992 591 PRINTS Cysteinyl-tRNA synthetase signature 258 276 IPR024909 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01992 Vian-Chr4 36579991 36584368 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01992 K01883 - gmx:100786700 1026.93