Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01961 ATGATGAAGCTCTTTTCCTTCCTAATATTTTCAAGCTTTTTTCTCAGACGAGTGAGCCTGGTTATTGGAGACGTTGGTACTGCTGCATCTTATGGACCACCATACATACCTACTGCTTGCGGGGGAAACAGGGCAGGGCAATTTCCTCCAGGAAATCTATTTGCGGCTGTGAATGAAGGGTTATGGGATAACGGAGCAGCGTGTGGAAGGAGATACAGAATAAGCAACCAAAACCAAACCAAAGCTAATGCCACCAACTTACGATTGACAATGGCAATGATCACTCACTTCGAGATAATCAGGCCCGTAACACTGAGTAGCTCAGTGAGTACCACTGAAATAAATTCATTGATAAGACATGTGGTTTTTTCCAAAAATGGCCAGGTCACCAGGCTGCAAGACCGAGCCGTCTACTTGTCGAGTAAGAGCATGGAAATTGGTGACGGAAGCACAGAGGAGTATCTACATAGCTCGATAGAGAGCTTGGAGGAGTTGATGGAGAACTCAGACTACTTCATGGAAATCTCGAATAGGCCTAGTGTGAACGAGTTGGAGCGGCGAGAGAGGAGAAGGTATTTTGATCGGATGGTGAGAATGTATGGCATAAAAACGAGTGTTGAACACTATGGATGCAAGGTTGACTTGCTAGGAAGATCTGGCTTCATTCAAGAGGCATATGATATTATCAAGGGCCTACCTATGGAGCGGAATGGTGTTATATCGAGGAGTTTTCTGGCAGCTTGCAGGCATCACGGGTCAAGAGCCAAGATGAAGAACAAGTCGGCCCGATTATTAGAAAAGTTGGTCAAGCCTCCCTTCCTCCTCATCGGCTTGGGCGGTCTTCTTCTGCGCCTCTTTGGCCTTCAGCGCCTGCAACTTGGAGTGGTTGTAATACGCCACGCCAAGGAACGCCAGCCCGTAACCGAACAAATTAATCGGCGTCACGGTGTCCTTGATAACCGACCACGAGAAGGCAATCAGGAGCCAGTCCTTCACCACGCCAGCGACGTTCATTGTCAGTGCCGAGGTCTTCCCGACGAGGAGAAAAACTGCGAGGTTGAGCGCGAAGGCACAGAAGGAGTTGGTCCCGAAGACCACGAAATCGAACTGAAAGGTGGAGGTGTCTCGGAGGACAGGGTACTCGACGAAGATCCAGGGGATGGAGAGGAAGACGAGGCAGCAGGGGGCGACGTAGTAGAGCGAGGTGATGGGGTTGAGTGA 1221 0.4955 MMKLFSFLIFSSFFLRRVSLVIGDVGTAASYGPPYIPTACGGNRAGQFPPGNLFAAVNEGLWDNGAACGRRYRISNQNQTKANATNLRLTMAMITHFEIIRPVTLSSSVSTTEINSLIRHVVFSKNGQVTRLQDRAVYLSSKSMEIGDGSTEEYLHSSIESLEELMENSDYFMEISNRPSVNELERRERRRYFDRMVRMYGIKTSVEHYGCKVDLLGRSGFIQEAYDIIKGLPMERNGVISRSFLAACRHHGSRAKMKNKSARLLEKLVKPPFLLIGLGGLLLRLFGLQRLQLGVVVIRHAKERQPVTEQINRRHGVLDNRPREGNQEPVLHHASDVHCQCRGLPDEEKNCEVEREGTEGVGPEDHEIELKGGGVSEDRVLDEDPGDGEEDEAAGGDVVERGDGVE 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01961 406 Gene3D Tetratricopeptide repeat domain 186 272 IPR011990 GO:0005515
Vian4g01961 406 MobiDBLite consensus disorder prediction 350 406 - -
Vian4g01961 406 CDD DPBB_EG45-like 24 82 - -
Vian4g01961 406 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 4 81 - -
Vian4g01961 406 Gene3D - 24 97 IPR036908 -
Vian4g01961 406 MobiDBLite consensus disorder prediction 350 381 - -
Vian4g01961 406 SUPERFAMILY Barwin-like endoglucanases 22 80 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01961 Vian-Chr4 36234236 36249610 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01961 188 281 Glycoside Hydrolase AT3G49170 34.043 6.27e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01961 - - gmx:100792215 124.405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01961 4 36234236 36249610 Vian4g01961 4 36234236 36249610 ECH