LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian4g01959	ATGGAAGCGAGTGCGGGAATGGTCGCTGGCTCGCACAAACGGAACGAGCTCGTTCGGATTCGCCACGATTCTTCTGACAGCGGGTCTAAACCCTTGAAGAACTTGAATGGGCAAATCTGTCAAATATGCGGTGATACTGTTGGATTGACTGCGACTGGTGATGTGTTTGTTGCTTGCAACGAGTGCGCCTTCCCCGTGTGTCGTCCTTGTTATGAATACGAGCGAAAGGATGGGAACCAGTCTTGTCCACAATGCAAGACTAGATACAAGAGGCACCGAGGGAGTCCTCGAGTAGAGGGAGATGAAGATGAAGTGGACTCTGATGACATAGAGAATGAGTTCAATTATGCCCAGGGAAAGGCCAAGGCCAGGCGGCAGTGGGAGGAAGATGCTGACCTTTCATCGTCGTCTAGACGTGAATCTCAACAGCCAATTCCCCTCCTCACCAATGGCCAAACGATGTCTGGTGAGATTCCATGTGCCACACCTGATACTCAATCTGTGCGAACTACTTCAGGTCCTTTGGGGCCATCTGAGAAGGTTCACTCACTCCCCTATATTGATCCGAGGCAACCAGTTCCTGTAAGAATTGTGGACCCATCAAAGGACTTAAATTCTTATGGTCTGGGAAATGTTGACTGGAAAGAAAGGGTTGAAGGTTGGAAGCTTAAGCAGGAAAAAAATATGGTACAAATGACCGGTAGATACGCCGAAGGGAAAGGAGGAGATGTTGAAGGGACTGGTTCTAATGGAGAAGAACTTCAAATGGTTGACGATGCTCGACAACCCATGAGTCGTGTGGTGCCAATTCCTTCATCTCAGCTGACACCTTATCGTGTTGTTATTGTACTCCGGTTGATTATTCTTGGCTTCTTCTTGCAATATCGTGTAACACACCCTGTGAAAGATGCATACCCACTGTGGCTGACATCAGTTATTTGTGAGATTTGGTTTGCCTTATCCTGGATACTAGATCAGTTTCCAAAATGGTCTCCAGTAAATCGTGAGACTTATCTTGAACGGCTTGCTTTAAGATATGATCGTGATGGAGAACCATCACAGCTAGATCCTGTTGATGTGTTTGTGAGTACAGTGGACCCCCTTAAAGAGCCACCTCTTGTAACTGCAAACACGGTGTTGTCAATACTTTCTGTTGATTACCCTGTGGACAAAGTTTCCTGCTACGTATCAGATGATGGTTCAGCTATGCTGACGTTTGAAGCACTATCAGAAACAGCTGAGTTTGCGAAGAAGTGGGTGCCCTTCTGCAAAAAGCACAATATTGAACCAAGAGCCCCGGAGTTTTATTTTCAACAGAAGATTGATTACTTGAAGGACAAGATTCAACCCTCATTTGTAAAGGAGCGACGAGCAATGAAGAGAGAATATGAAGAATTCAAAGTTCGGATCAATGCCCTTGTAGCCAAAGCTCAGAAGATGCCAGAGGAAGGTTGGACAATGCAGGATGGAACTCCTTGGCCTGGAAATAATCCTAGGGATCATCCTGGAATGATTCAGGTGTTTTTAGGTCATAGTGGAGGTCTGGATACAGATGGAAATGAGCTTCCTAGACTTGTTTATGTTTCTCGTGAGAAGCGACCAGGCTTCCAACATCACAAGAAGGCTGGAGCTATGAATGCATTGATTCGTGTATCTGCTGTCTTGACCAATGGTGCATATCTTCTGAATGTGGATTGTGATCACTATTTTAATAATAGCAAAGCTCTGAAAGAAGCCATGTGTTTCATGATGGATCCTGTTCTTGGAAAGAAGACATGCTATGTGCAGTTTCCTCAGAGGTTTGATGGCATTGACTTGCATGATAGATATGCCAATCGTAATATTGTGTTCTTTGATATCAACATGAAAGGTCATGATGGTATTCAGGGTCCAGTCTATGTGGGAACTGGTTGTTGTTTCAACAGGCAGGCTTTGTATGGTTATGATCCTGTTCTAACTGAGGAAGATTTGGAACCTAACATTATTGTAAAGAGTTGTTGGGGTTCTAGAAAGAAGGGAAAGGGTGGGAATAAGAAGTACATTGACAAGAAGAGGGCGATGAACAGAACTGAATCTACTGTTCCCATATTTAATATGGAAGACATAGAGGAGGGTGTTGAAGGTTATGACGATGAAAGGTCGCTGCTTATGTCTCAAAAGAGTTTGGAGAAGCGTTTCGGTCAGTCTCCAGTTTTTATTGCTGCCACTTTCATGGAGCAGGGTGGCATTCCACCTTCAACAAACCCTGCAACTCTTCTTAAGGAAGCAATCCACGTTATCAGCTGTGGTTATGAAGACAAGACTGAATGGGGAAAAGAGATTGGATGGATCTATGGTTCGGTGACAGAAGATATCTTGACTGGGTTTAAGATGCATGCTCGTGGTTGGATTTCCATTTATTGCATGCCACCTCGCCCAGCATTTAAGGGTTCTGCTCCTATCAATCTTTCAGATCGTCTCAATCAGGTGCTTCGGTGGGCATTGGGTTCAATTGAGATTTTTCTTAGCAGGCATTGTCCCTTGTGGTATGGATACAATGGAAGGTTGAAGCCCCTGATGAGACTTGCTTATATTAACACTATTGTCTACCCCTTTACCTCAATCCCTTTGATTGCTTACTGTACGCTTCCTGCCTTTTGTCTCCTCACAAATAAATTTATTATTCCTGAGATAAGCAACTTTGCCAGCATGTGGTTTATTCTGCTCTTCGTCTCCATTTTTACTACTTCAATTCTTGAGCTTAGGTGGAGTGGGGTCAGCATAGAAGACTGGTGGAGAAATGAACAATTCTGGGTCATCGGTGGAACTTCTGCACATCTTTTTGCTGTGTTTCAGGGGCTTCTAAAAGTGCTTGCTGGGATCGATACAAATTTTACTGTTACATCAAAGGCATCGGACGAGGATGGGGATTTTGCAGAGCTTTATGTGTTTAAATGGACATCGCTTCTCATCCCTCCTACGACGGTGCTTATTGTGAACTTGGTAGGGATTGTGGCTGGTGTATCCTACGCCATAAACAGTGGTTACCAGTCTTGGGGTCCACTATTTGGGAAGCTGTTCTTTGCTATCTGGGTCATTGCCCATTTATACCCATTCTTGAAGGGTCTCTTGGGCAGGCAAAATCGTACCCCAACCATTGTCATTGTCTGGTCGGTTCTTCTTGCTTCAATATTCTCCTTGCTCTGGGTGAGGATTGATCCCTTCACCTCAGGCTCCAGCAGATTAACCAATGGTCAATGTGGCATCAACTGTTAG	3255	0.4458	MEASAGMVAGSHKRNELVRIRHDSSDSGSKPLKNLNGQICQICGDTVGLTATGDVFVACNECAFPVCRPCYEYERKDGNQSCPQCKTRYKRHRGSPRVEGDEDEVDSDDIENEFNYAQGKAKARRQWEEDADLSSSSRRESQQPIPLLTNGQTMSGEIPCATPDTQSVRTTSGPLGPSEKVHSLPYIDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQEKNMVQMTGRYAEGKGGDVEGTGSNGEELQMVDDARQPMSRVVPIPSSQLTPYRVVIVLRLIILGFFLQYRVTHPVKDAYPLWLTSVICEIWFALSWILDQFPKWSPVNRETYLERLALRYDRDGEPSQLDPVDVFVSTVDPLKEPPLVTANTVLSILSVDYPVDKVSCYVSDDGSAMLTFEALSETAEFAKKWVPFCKKHNIEPRAPEFYFQQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPVLGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINMKGHDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKSCWGSRKKGKGGNKKYIDKKRAMNRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPSTNPATLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEIFLSRHCPLWYGYNGRLKPLMRLAYINTIVYPFTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFVSIFTTSILELRWSGVSIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSYAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSVLLASIFSLLWVRIDPFTSGSSRLTNGQCGINC	1084

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian4g01959	1084	PANTHER	X-BOX TRANSCRIPTION FACTOR-RELATED	262	1051	-	-
	Vian4g01959	1084	MobiDBLite	consensus disorder prediction	122	136	-	-
	Vian4g01959	1084	SUPERFAMILY	RING/U-box	25	112	-	-
	Vian4g01959	1084	MobiDBLite	consensus disorder prediction	137	177	-	-
	Vian4g01959	1084	MobiDBLite	consensus disorder prediction	1	29	-	-
	Vian4g01959	1084	ProSiteProfiles	Zinc finger RING-type profile.	40	86	IPR001841	-
	Vian4g01959	1084	MobiDBLite	consensus disorder prediction	14	28	-	-
	Vian4g01959	1084	MobiDBLite	consensus disorder prediction	76	187	-	-
	Vian4g01959	1084	Gene3D	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	516	658	IPR029044	-
	Vian4g01959	1084	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	22	113	IPR013083	-
	Vian4g01959	1084	CDD	mRING-HC-C4C4_CesA	38	88	-	-
	Vian4g01959	1084	SUPERFAMILY	Nucleotide-diphospho-sugar transferases	376	658	IPR029044	-
	Vian4g01959	1084	FunFam	Cellulose synthase	22	113	-	-
	Vian4g01959	1084	Pfam	Cellulose synthase	358	1071	IPR005150	GO:0016020\|GO:0016760\|GO:0030244
	Vian4g01959	1084	Coils	Coil	456	476	-	-
	Vian4g01959	1084	Pfam	Zinc-binding RING-finger	30	106	IPR027934	-
	Vian4g01959	1084	FunFam	Cellulose synthase	475	649	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian4g01959	Vian-Chr4	36216162	36221760	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian4g01959	1	1082	Glycosyltransferase	AT4G32410	87.558	0.0	1932

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian4g01959	K10999		-	gmx:100798193	2189.46