Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01926 ATGTCTAACAATCTGGTTTCAGAGCCCATGCCCAGTATGCAAATAGCTCGTTTGGAGCCGCTTATGAACAAGATTGATTCGTCAGGTAGACAGATGGAAATGGGGATTTTGGTTCCTGTGTCCAGTGATATTGTTTCACAGCCTATGGGAACCTCAAATGAACATGTTGGGTTATTGAGAGCTGTGCCTGGTGAATCTAGGTCTCAGGGCATGCCCCTTTCCACCATGCAGAGTGGGCGAGTAGAAGCACAAGCGATTAATCCAGGAATGCATCGAATTTTTTCCCCTAACCAACAGTCCATGCAAATGGGGAGGCTTCCAAATAGCGCAGGGCCTCAGCAGCAGCAGCAGCCAGCAACTCCCAAGCGCAAGGCACCAACGGAACTATCATCCAGTAGTTCCTTTAACAAGCGGGCTGTACAAATGGGAAACAGACCTTGGTTGCAGCAAGTACCTAATGCATCAAATAGAGGTTCTCCGCAGATGCAATCCTCGTCAATTGCCTCCAGGACACAGCATTCGGCAGCTTCTAGCAAGAGAAAAACACAGTTTGATAGCACCTCCGGTAAAGCCAGTACACCTCGGTCTGTGAATTCTAAAACTCAGAATACTCAGATAAAGCAGTCCTCCAAGGTTCAAACTGAATCAACTGAAAGTGTTAGGTCCAAGATGAGGGATTCATTAGCTGCTGCTCTGGCCTTGGTTTCTCAACAAGGTAAACCTCAGATCCCAAACAATAATACACCAACTGGTGAAGCTACCAATACTCAAGGTAAATTAGAGAACAACGCTCAATGTTCTGGATCAACACCTACATCCATCAATGGTCCACTGGAGCAAAGTATTTCTCAATCAGTGAATTCCTCTTTTGTTGAGGCTGATTCAGTTGGGCGGGTGGAGACAGAGCACATGCAGAGTACATCATTCAAAGAAGATTTTCCAGAAAAATACAAGGACTATGAAGCAGGATCCACAAATGCATCAAACAATGAAAGCATACTGACTTCTATGCAAGTCTTGAACTGTGATAAGCAAGATTTCCAGTCATGTTACACTTTGACTACTGATGATGTTCCTTTTAGTGACAGTTTCTTTATGAAAGATGATCTTTTGCAGGGAAATGGTCTTTCCTGGGTATTATCTGATATGGTTGACGTGGGAAATCAAAAGGAAAGTCAAACTAATATAGAGCAGAGATCAGAACCTGAGGAAACAGGTGAAGGTTGCAAGGAGGAGGTCCCTTTACCTGAACTTTTGGCTTCAAAAATCGAAGCAGAACTGTTCAAACTGTTTGGAGGTGTGAATAAGAAGTACAAAGAGAAAGGGAGGTCTCTTTTATTTAATTTAAAAGATCGCAATAACCCTGAACTTAGAGAAAGGGTTATGTTTGGTCAAATTCCTCCTGAACAATTATGTTCCATGACTGCAGAGGAACTTGCTTCAAAAGAGCTCTCTCAGTGGCGTATAGCCAAGGCTGAGGAGCTTGCTCAAATGGTGGTTTTACCTAATTCAGATGTTGATTTTAGGCGTTTGGTCAAGAAGACTCATAAAGGTGAATTTCAAGTGGAAGTTGAACATGAAGACAATGTATCCGTTGAGGTGGTTTCCGGTGGCACAACCTCAGTGGCTAGAAGCCAAACAGAAAAAAAGGATGTGGAAGGCACTTCTTCAAAACCTGATGTGAACATTAATGCTGATAAGCGCAATTTACAGAAGGATGATACATTTTCCATTACCATTTCATCCACTGACGGCACCGATCCAATGCAGGGCCTTATGACTGATGATGCCTTGAAGGACCCTGATTTTCTTCCACCAATTGTCTCTCTTGATGAATTCATGGAATCTCTTCATTCTGAGCCACCTTTTGAAAATTTACCACTAGAATCTGGGAAAGTGACACCTGCTTTAGACAAGGATGATGCAGGGGCTGGATCTAAATCAAAATCTTCTGATTTAACTTCAAATGAGCAAGCTGTTGTCACCCCTGACAAGTTTCAAAGCACACGTGTAAATTCAGATGCTGAAAAGGAGAAAAAGGCTGATACTGAATCCGGAACCATTTCTTCTGATACGAGATATAGTGGGAGTCAAGCTGACATGAAGTCAACTGATGGTCGTACCAAGGAAAGGCCAATCGAAAATGTGAAGCCTGCACCCAGCGATACTGAATTCAAAGGCAATCAGTCTCATGCCGAAGGGAGATACGGTAACGATAATAAATATACGAAGGATGCAGTCCCCACTAAGGGTGAATGCCTCTGGGAGGGAATGCTTCAACCCAATATATCTACCACTCAGTCTGTCATAAGCTTCTATAAGAGTGGCGAGAAAACTGCTGCTAAAGACTGGCCTGGGTTTCTCGAGATCAAGGGAAGGGTTCGACTAGATGCATTTGAGAAATTTCTTCAAGATCTTCGATTGTCTAGGAGTCGTGCAATCATGGTTTCACATTTCCTTTCGAAAGAGTTGGACGAGCAATCAACTCTACGCGAGGTGGCTGACTCGTATATTTCGGACGAGAGAGTAGGATTTGCAGAGCCTGTGCATGGAGTAGAACTTTACTTTTGCCCACCTCATAAGAAAACAGTTGAAATGCTGAGCAACATACTTCCAAAGGAACAAATAGAGGCAGTTAATTCTATTGATAATGGTCTAATTGGTATTATTGTATGGAGAAAAACTAATTTAACGTCTATATCACCCACCACTGCTACTCACCACAAACACAGCTCTAAAAGACAACAATACTTCAGTAGGAGACAGCAAGATATAAATGTGAATGCCAATTCCACCCATAAAGCAGTACCCTCTACGGACCTTAAGACCATTGAGAATGAGAATGATGACGATGATGATGTTCCTCCTGGATTTGGGCCACCTGCTGCCCGAGTCGAGGATGACCTGCCGGAGTTTAATTTCTCCAGTAGTTCGATTCCACCACACTTAGCCCAAAAACCAAAGGAACTATCAAATATGGTTACATCACACTCGGTTAACCCAGCCCCACCACCTGCACGTCCTGTAGAACAAATGAGAGAACTTGTATACAAATATGGGCAAAACAAACCAAGTGCACCTTCAGTAAACTGGCAGGATAAATTTGGGGGGACAATTCAACCCTGGAATGATGATGATGATGACATACCTGAATGGCAGCCCCAAACATCCCAGAATCAGTTTCTTCCCCAACAGACAATGCATAACTTTCATCTTCGACCGCACAATATGAATCAATCATTACCGGGTTCACAACAACAGCCTATTATGACACCACAATATCTGCAACCCCCGGTGAATGTGACTCATACCCAAAGAAATTTTGACCCTCAATGGGTTCCTTCTCCCCAGGCTAGCAATTTACCGCCAAGAGGTGGACCTCCTTACGGAGCGCCTTCTCAAGGCACTACCTGGCCTCAAAATGTGTCTAGAAGTAGGGGATTTTAG 3447 0.4352 MSNNLVSEPMPSMQIARLEPLMNKIDSSGRQMEMGILVPVSSDIVSQPMGTSNEHVGLLRAVPGESRSQGMPLSTMQSGRVEAQAINPGMHRIFSPNQQSMQMGRLPNSAGPQQQQQPATPKRKAPTELSSSSSFNKRAVQMGNRPWLQQVPNASNRGSPQMQSSSIASRTQHSAASSKRKTQFDSTSGKASTPRSVNSKTQNTQIKQSSKVQTESTESVRSKMRDSLAAALALVSQQGKPQIPNNNTPTGEATNTQGKLENNAQCSGSTPTSINGPLEQSISQSVNSSFVEADSVGRVETEHMQSTSFKEDFPEKYKDYEAGSTNASNNESILTSMQVLNCDKQDFQSCYTLTTDDVPFSDSFFMKDDLLQGNGLSWVLSDMVDVGNQKESQTNIEQRSEPEETGEGCKEEVPLPELLASKIEAELFKLFGGVNKKYKEKGRSLLFNLKDRNNPELRERVMFGQIPPEQLCSMTAEELASKELSQWRIAKAEELAQMVVLPNSDVDFRRLVKKTHKGEFQVEVEHEDNVSVEVVSGGTTSVARSQTEKKDVEGTSSKPDVNINADKRNLQKDDTFSITISSTDGTDPMQGLMTDDALKDPDFLPPIVSLDEFMESLHSEPPFENLPLESGKVTPALDKDDAGAGSKSKSSDLTSNEQAVVTPDKFQSTRVNSDAEKEKKADTESGTISSDTRYSGSQADMKSTDGRTKERPIENVKPAPSDTEFKGNQSHAEGRYGNDNKYTKDAVPTKGECLWEGMLQPNISTTQSVISFYKSGEKTAAKDWPGFLEIKGRVRLDAFEKFLQDLRLSRSRAIMVSHFLSKELDEQSTLREVADSYISDERVGFAEPVHGVELYFCPPHKKTVEMLSNILPKEQIEAVNSIDNGLIGIIVWRKTNLTSISPTTATHHKHSSKRQQYFSRRQQDINVNANSTHKAVPSTDLKTIENENDDDDDVPPGFGPPAARVEDDLPEFNFSSSSIPPHLAQKPKELSNMVTSHSVNPAPPPARPVEQMRELVYKYGQNKPSAPSVNWQDKFGGTIQPWNDDDDDIPEWQPQTSQNQFLPQQTMHNFHLRPHNMNQSLPGSQQQPIMTPQYLQPPVNVTHTQRNFDPQWVPSPQASNLPPRGGPPYGAPSQGTTWPQNVSRSRGF 1148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01926 1148 MobiDBLite consensus disorder prediction 1104 1148 - -
Vian4g01926 1148 MobiDBLite consensus disorder prediction 1133 1148 - -
Vian4g01926 1148 MobiDBLite consensus disorder prediction 149 224 - -
Vian4g01926 1148 MobiDBLite consensus disorder prediction 238 286 - -
Vian4g01926 1148 MobiDBLite consensus disorder prediction 537 564 - -
Vian4g01926 1148 MobiDBLite consensus disorder prediction 926 942 - -
Vian4g01926 1148 CDD SPOC_TFIIS 754 892 - -
Vian4g01926 1148 MobiDBLite consensus disorder prediction 687 702 - -
Vian4g01926 1148 MobiDBLite consensus disorder prediction 926 984 - -
Vian4g01926 1148 SMART mid_6 382 490 IPR003618 GO:0006351
Vian4g01926 1148 MobiDBLite consensus disorder prediction 149 217 - -
Vian4g01926 1148 MobiDBLite consensus disorder prediction 101 134 - -
Vian4g01926 1148 MobiDBLite consensus disorder prediction 620 743 - -
Vian4g01926 1148 MobiDBLite consensus disorder prediction 670 686 - -
Vian4g01926 1148 Pfam SPOC domain 750 892 IPR012921 -
Vian4g01926 1148 Pfam Transcription factor S-II (TFIIS), central domain 401 495 IPR003618 GO:0006351
Vian4g01926 1148 MobiDBLite consensus disorder prediction 703 717 - -
Vian4g01926 1148 MobiDBLite consensus disorder prediction 389 408 - -
Vian4g01926 1148 Gene3D - 390 482 IPR036575 GO:0006351
Vian4g01926 1148 MobiDBLite consensus disorder prediction 647 669 - -
Vian4g01926 1148 MobiDBLite consensus disorder prediction 237 286 - -
Vian4g01926 1148 SUPERFAMILY Elongation factor TFIIS domain 2 415 483 IPR036575 GO:0006351
Vian4g01926 1148 ProSiteProfiles TFIIS central domain profile. 398 507 IPR003618 GO:0006351
Vian4g01926 1148 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 114 975 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01926 Vian-Chr4 35817724 35823078 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01926 - - vum:124825671 2216.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01926 4 35817724 35823078 Vian4g01926 4 35817724 35823078 ECH