Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01908 ATGGGGGGTGGAATGTTTGGAAGGTGTGATTTTGTTGTTGTTGTGGTGTTGGTGGGGTTGGTGGGGTCAGTGAGTGGGATTGGTGTGAACTGGGGGACACAGTCGACACACCCTTTGTCTCCTTCGAAGGTGGTGAAGATGCTGAAGGACAATGGCATTCAGAAGGTGAAACTTTTTGATGCTGATCCTGGTATTTTGGATGCTCTCAAGAAGTCTGGGATACAGGTCATGGTGGGGATTCCCAATGACATGCTTTATACGCTCGCCAACAGTGTTGAAGCAGCTGAGAAATGGGTTTCCAAGAATGTTTCCAAACATGTCTCTTCTGGAGGAGTTGACATCAGGTATGTTGCAGTGGGGAATGAACCATTCTTGTCAACATACAATAGAACCTATGAAACCACAACTCTTCCAGCACTTCAAAACATTCAGGCAGCTCTCACAAAGTCCGGTTTGAGCAACCGTGTGAAGGTCACAGTCCCCTTAAATGCCGATGTGTACCAAAGCTCGTCAGAGAAGCCGTCAGACGGCGGTTTCAGACCAGACATTAACAGTCTGATGGTACAGATTGTGAAGTTCTTGAATGACAATGGCGCACCTTTCACAGTGAACATCTACCCTTTCATCAGCCTCTACGCTGACCCCAATTTCCCTGTTGACTATGCCTTCTTTAACGGCTACCAGCCTGCTATAAATGACAATGGAAGAAACTACGACAACGTGTTTGATGCTAACCACGACACTCTGGTGTGGGCACTGCAGAAGAATGGCTTCGGAAACTTGCCTATAATTGTAGGGGAAATTGGGTGGCCTACAGATGGAGACAGAAATGCAAACCTTCAAAGTGCACAACGTTTCAACCAAGGTTTCATGTCACGTTACATGTCTGGAAAAGGGACCCCAATGAGGCCCAGTCCTATAGATGCTTATTTGTTCAGTCTGATAGATGAAGACGCCAAAAGCATTCAGCCAGGAAACTTTGAGCGTCATTGGGGGATGTTTTACTTGGATGGACAACCAAAATACCAACTTAATCTTGGGTCTGCAAGAGGTAATGGGTTAGTGGGTGCTGAGGGGGTTGATCATTTGGCTAAAAAGTGGTGCGTTTTGAAACCTTCGGCAAACCTTAACGATGACCAAGTGGCACCTAGTGTGGCCTATGCTTGTCAAAATGCTGATTGCACTAGTCTTGGGTATGGAACTTCTTGTGGCAATTTGGATGTGCATGGTAACATTTCTTATGCGTTTAACAGTTACTATCAGGTCAATGACCAGATGGACAGTGCCTGCAAATTCCCTGGCCTTTCTATGGTCACTGACAAAGATCCTTCTGTTGGAGATTGCAAGTTCAGAATCATGATCCAGACAGATTCCGCTGTGTTACATGGAAAAATTGGATCTCTACCCACAGTGCTGTGTTCTTTTGTAATTTTCCTATGTTGTAATCTTTTGTTTTGA 1458 0.4534 MGGGMFGRCDFVVVVVLVGLVGSVSGIGVNWGTQSTHPLSPSKVVKMLKDNGIQKVKLFDADPGILDALKKSGIQVMVGIPNDMLYTLANSVEAAEKWVSKNVSKHVSSGGVDIRYVAVGNEPFLSTYNRTYETTTLPALQNIQAALTKSGLSNRVKVTVPLNADVYQSSSEKPSDGGFRPDINSLMVQIVKFLNDNGAPFTVNIYPFISLYADPNFPVDYAFFNGYQPAINDNGRNYDNVFDANHDTLVWALQKNGFGNLPIIVGEIGWPTDGDRNANLQSAQRFNQGFMSRYMSGKGTPMRPSPIDAYLFSLIDEDAKSIQPGNFERHWGMFYLDGQPKYQLNLGSARGNGLVGAEGVDHLAKKWCVLKPSANLNDDQVAPSVAYACQNADCTSLGYGTSCGNLDVHGNISYAFNSYYQVNDQMDSACKFPGLSMVTDKDPSVGDCKFRIMIQTDSAVLHGKIGSLPTVLCSFVIFLCCNLLF 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01908 485 Gene3D Glycosidases 26 352 - -
Vian4g01908 485 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 18 439 IPR044965 GO:0004553|GO:0005975
Vian4g01908 485 ProSitePatterns Glycosyl hydrolases family 17 signature. 261 274 IPR000490 GO:0004553|GO:0005975
Vian4g01908 485 Gene3D - 362 459 - -
Vian4g01908 485 FunFam Glucan endo-1,3-beta-glucosidase 8 362 459 - -
Vian4g01908 485 SMART X8_cls 366 450 IPR012946 -
Vian4g01908 485 FunFam Glucan endo-1,3-beta-glucosidase 5 26 352 - -
Vian4g01908 485 Pfam X8 domain 366 436 IPR012946 -
Vian4g01908 485 SUPERFAMILY (Trans)glycosidases 27 345 IPR017853 -
Vian4g01908 485 Pfam Glycosyl hydrolases family 17 27 345 IPR000490 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01908 Vian-Chr4 35593085 35596705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01908 11 459 Glycoside Hydrolase AT4G31140 71.047 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01908 K19893 - gmx:100796552 912.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01908 4 35593085 35596705 Vian7g00368 7 10029908 10032556 PCT