Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01903 ATGATGAATCCATTCACATATTCAACATACAAAAATTTCCTGCAAGACAGTTTAAAGAAATCCAAAGAAGCTTGGCAGGAATCAGGACACTTATTTCAAGAACATATCTTGTATGCTTTGGAAAAATCATTCCAGAAAAGCTCTTCTTCGTCAACGTACGAGAGGAGTGGCAAAGGAACGGCCATTGTATGGTTCAGGAATGATCTCAGAGTTTTGGATAACGAAGCTCTCTACAAGGCATGGCTTTCCTCCGAAACCGTTTTACCTGTCTACTGCGTTGACCCTCGACTCTTTGCCACTACTTATCATTTCGGCTTTCCCAAAACCGGTGCATTGAGAGCGCAATTTCTCCTTGAATGTGTGGTGGACTTGAGGAAGAATTTGATGAAAAAAGGGCTTAATTTGCTTGTACAACATGGGAAGCCTGAGGAGATTCTTCCTTCTCTTGCCAAAGCATTTCAAGCTCACACAGTGTATGCACAGAAAGAAACGTGCAGTGAGGAGCTGAATGTTGAACGGTTAGTCATGGAAGGTCTTAAACAAGTTGCGACATCATCAGGAGAATCGAGTGGTGTCACAATATGTATACTCAATTTCGCAAGGCACGATATTCTGAATCTGAGTTTCTTTTCACTGCTACAAATGCTTACTGATGGAATTCGAAATTTGCAGATTATTGAAGCCAAATGTACCATACGCTCGTGCATCAAACTACCACCATCTCTTGGACCACCTCCCTTGATTGAGGATTGGGGATGCCTTCCTTCATTAGAACAGCTTGGACTTTGCTCACAGAATGTTATCAAGGGAATGAAGTTTGTAGGGGGTGAAACTGCAGGATTGAGCAGAGTACATGAATACTTCTGGAAGAAGGATTTGCTGAAGGTATATAAAGAGACCAGGAATGGGATGTTAGGGCCTGATTATTCTACCAAATTCTCACCATGGCTTGCCTCGGGAAGTTTGTCTCCTCGTTTCATATATGAAGAGGTAAAGAGATATGAGAACGAAAGACTAGCAAATAGTTCTACCTACTGGGTTTTGTTTGAGTTGATATGGAGGGATTACTTTAGGTTTCTGTCAGTGAAATATGGGAATTCGCTTTTCCATCTAGGTGGCCCTAGGAAAGTTCATCGCAACTGGAGCCAAGACAAGAATTTGTTTGAATCCTGGAGAGACGGTTGTACCGGGTATCCTCTCATAGATGCCAACATGAAAGAACTATCGACTACAGGGTTTATGTCTAATCGAGGACGACAGATTGTATGTTCCTTTCTTGTTCGTGATATGGGTATAGATTGGCGCATGGGAGCGGAATGGTTTGAGACGTGCCTTTTGGATTATGATCCATGTTCTAATTATGGAAACTGGACTTACGGATCAGGAGTTGGGAATGATCCAAGAGAAGATCGGTATTTCAGCATCCCAAAACAAGCACAAACATATGACCCTGAAGGTGAGTATGTTGCATACTGGTTGCCACAATTGCACAAAATCCAAAAGGAGAAAAGGAACTTCCCTGCAAATATGTACATTCCTCAAATTGTGCCTCTCAAGTTTGGAACAATTAGTGGAAACAACAAGGATAGGTTTGGTGCAAGAAGAATCAACAATGAAAGAAAATGGAACTTTCAAAAGAAATGA 1644 0.4161 MMNPFTYSTYKNFLQDSLKKSKEAWQESGHLFQEHILYALEKSFQKSSSSSTYERSGKGTAIVWFRNDLRVLDNEALYKAWLSSETVLPVYCVDPRLFATTYHFGFPKTGALRAQFLLECVVDLRKNLMKKGLNLLVQHGKPEEILPSLAKAFQAHTVYAQKETCSEELNVERLVMEGLKQVATSSGESSGVTICILNFARHDILNLSFFSLLQMLTDGIRNLQIIEAKCTIRSCIKLPPSLGPPPLIEDWGCLPSLEQLGLCSQNVIKGMKFVGGETAGLSRVHEYFWKKDLLKVYKETRNGMLGPDYSTKFSPWLASGSLSPRFIYEEVKRYENERLANSSTYWVLFELIWRDYFRFLSVKYGNSLFHLGGPRKVHRNWSQDKNLFESWRDGCTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGSGVGNDPREDRYFSIPKQAQTYDPEGEYVAYWLPQLHKIQKEKRNFPANMYIPQIVPLKFGTISGNNKDRFGARRINNERKWNFQKK 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01903 547 PANTHER CRYPTOCHROME 59 510 IPR002081 -
Vian4g01903 547 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 58 181 IPR036155 -
Vian4g01903 547 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 370 524 - -
Vian4g01903 547 NCBIfam DASH family cryptochrome 60 495 IPR014133 GO:0003913|GO:0006281
Vian4g01903 547 Gene3D - 220 369 - -
Vian4g01903 547 Pfam DNA photolyase 61 182 IPR006050 -
Vian4g01903 547 Pfam FAD binding domain of DNA photolyase 349 509 IPR005101 -
Vian4g01903 547 PRINTS DNA photolyase signature 455 469 IPR002081 -
Vian4g01903 547 PRINTS DNA photolyase signature 416 434 IPR002081 -
Vian4g01903 547 PRINTS DNA photolyase signature 396 412 IPR002081 -
Vian4g01903 547 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 269 508 IPR036134 -
Vian4g01903 547 Gene3D HUPs 27 187 IPR014729 -
Vian4g01903 547 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 59 192 IPR006050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01903 Vian-Chr4 35505530 35513070 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01903 K25656 - gmx:100783312 868.611