Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01898 ATGGAAGGGTTGTCGTCTTCAATGGCGATTGCGCAGAAAACATGGGAGCTCGAGAACAACATCATCCCCATGGACACTCCGGGAGCCGCCTCATCCTCCTCCGCCGCAACTGCCACCAACGCCGACGACTCTATATTCTACTACGACGAGGCCGGGCAGAATGAGTTCCAGCGCGACAAGCCCTGGGCCAATGACCCTCACTACTTCAAGCGCGTCAAGATCTCCGCACTCGCGCTACTCAAGATGGTCGTCCACGCACGCTCCGGCGGAACTATCGAGGTCATGGGCCTCATGCAGGGAAAGACCGATGCCGACGCCATCATCGTCATGGACGCCTTCGCTCTCCCCGTTGAAGGCACGGAAACGCGCGTTAATGCTCAGGCAGATGCGTACGAGTATATGGTCGATTATTCCCAGACAAATAAACAGGCTGGAAGGTTAGAGAATGTTGTGGGATGGTATCACTCTCATCCTGGGTATGGGTGCTGGCTGTCGGGGATCGATGTTTCGACGCAGATGCTGAATCAGCAGTTTCAGGAGCCGTTTCTGGCGGTTGTGATTGATCCCACGAGGACTGTTTCGGCGGGGAAGGTTGAGATTGGGGCTTTTAGGACTTACCCCGACGGTTATAAGCCTCCGGATGAGCCCATTTCTGAGTATCAAACTATCCCTCTCAATAAGATTGAGGACTTTGGTGTCCACTGTAAACAGTATTATGCCTTGGATATCACTTACTTTAAGTCATCTCTTGATTCACATCTCTTGGATCTTCTGTGGAACAAGTATTGGGTGAATACATTGTCGTCTTCTCCTCTGTTGGGTAATGGAGATTATGTTGCTGGACAAATCTCTGATTTAGCTGAAAAGCTAGAACAAGCAGAGAATCAGTTGGCACACTCACGCTTTGGGCCACTAATAGCACCGACACCTAGAAAGAAAGAGGAAGAATCTCCTCTTGCTAAAATTACTCGTGACAGTGCTAAAATAACTGTGGAGCAGGTGCATGGTCTGATGTCACAGGTCATCAAGGACATTTTGTTTAACTCCGTCCATCAAGCAAATAGAAATCGCACAGAACCATCTGGTCCTGAACCAATGATTGAAAGCTGA 1110 0.4982 MEGLSSSMAIAQKTWELENNIIPMDTPGAASSSSAATATNADDSIFYYDEAGQNEFQRDKPWANDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDADAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPDGYKPPDEPISEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDSHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRFGPLIAPTPRKKEEESPLAKITRDSAKITVEQVHGLMSQVIKDILFNSVHQANRNRTEPSGPEPMIES 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01898 369 SMART pad1_6 71 208 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vian4g01898 369 Gene3D Cytidine Deaminase, domain 2 4 274 - -
Vian4g01898 369 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 69 180 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vian4g01898 369 FunFam COP9 signalosome complex subunit 5 5 274 - -
Vian4g01898 369 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 58 356 - -
Vian4g01898 369 CDD MPN_RPN11_CSN5 61 333 - -
Vian4g01898 369 ProSiteProfiles MPN domain profile. 72 209 IPR037518 -
Vian4g01898 369 SUPERFAMILY JAB1/MPN domain 71 209 - -
Vian4g01898 369 Pfam Cop9 signalosome subunit 5 C-terminal domain 268 348 IPR040961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01898 Vian-Chr4 35459999 35465589 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01898 K09613 - gmx:100817371 721.465