Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01874 ATGGATCAGAAAGTCGATTTCAGCGCTCCCCATTCCATGGGAACCACTATCATCGGCGTTACTTACAAAGACGGTGTCGTTTTAGGAGCCGATTCTCGAACCAGCACCGGAGTGTATGTTGCCAACCGGGCATCAGACAAAATTACACAGCTCACTGATAATGTCTATGTCTGTCGTTCTGGATCGGCTGCAGATTCTCAGATTGTATCTGACTATGTGCGTTACTTCCTCCATCAACACACGATACAACTTGGACAACCTGCAACAGTTAAAGTTGCTGCAAACCTTGTCCGGCTTCTCTCATACAACAACAAGAATTTCTTAGAGACTGGGTTAATTGTTGGAGGTTGGGATAAATATGAAGGTGGACAAATTTTTGGCGTCCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATTGGAGGATCTGGCTCTAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGGGAATGAGCAAGGAGGAAGCTGAGGATTTAGTTAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCCAGTGGTGGGGTGGTCCGAACCGTCATAATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCATTATGGCATGAGGAACTGGAGCCCCATAACTCTTTGCTTGACATTCTTGGTGCCCCAGAGCCGATGAGCATTCACAGATTTAAGATCAAAGGTCGCGTTTATCCCGCTGTTCTCCCCGTCCACAATGACAAAGTTAATGGCAGGGTGCTTCTTGGTTTATCGGGAGTTGAACTGCATATTTTAGATGAGTTCGAGGATGATGAATATACTAGAACTGATGTTGAGGTTTTCTTGGAGGACAAGTCTGAAAAGATGCAAGTTTACGCATATGTTTGGGGCAATAGAAATGACCCCAACTTATATTCAGAGTGGGACTTTGAGGAATGGAAACAAATTCACATGAATGATTTCGTTAAGATGACCAATAGCTTTATGGAAGAATTGGAATCGCCAGAATCCAAGCCAAGGGTGCAGACTTATGAAGCCTTCTACAAGGAAGAAAAGGATAAGCCACTTCAACCTTGA 1092 0.446 MDQKVDFSAPHSMGTTIIGVTYKDGVVLGADSRTSTGVYVANRASDKITQLTDNVYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLETGLIVGGWDKYEGGQIFGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMSKEEAEDLVKKAVSLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLPLWHEELEPHNSLLDILGAPEPMSIHRFKIKGRVYPAVLPVHNDKVNGRVLLGLSGVELHILDEFEDDEYTRTDVEVFLEDKSEKMQVYAYVWGNRNDPNLYSEWDFEEWKQIHMNDFVKMTNSFMEELESPESKPRVQTYEAFYKEEKDKPLQP 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01874 363 PANTHER METALLOPROTEASE TLDD 4 209 IPR023333 -
Vian4g01874 363 ProSitePatterns Proteasome beta-type subunits signature. 18 65 IPR016050 GO:0005839|GO:0051603
Vian4g01874 363 CDD proteasome_beta_type_6 15 202 - -
Vian4g01874 363 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 6 204 IPR029055 -
Vian4g01874 363 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 15 218 IPR029055 -
Vian4g01874 363 PRINTS Proteasome component signature 143 154 IPR000243 GO:0004298|GO:0005839|GO:0051603
Vian4g01874 363 PRINTS Proteasome component signature 22 37 IPR000243 GO:0004298|GO:0005839|GO:0051603
Vian4g01874 363 PRINTS Proteasome component signature 154 165 IPR000243 GO:0004298|GO:0005839|GO:0051603
Vian4g01874 363 PRINTS Proteasome component signature 179 190 IPR000243 GO:0004298|GO:0005839|GO:0051603
Vian4g01874 363 ProSiteProfiles Proteasome beta-type subunit profile. 14 193 IPR023333 -
Vian4g01874 363 CDD GGCT_like 234 301 IPR013024 -
Vian4g01874 363 Pfam Proteasome subunit 13 193 IPR001353 GO:0005839|GO:0051603
Vian4g01874 363 FunFam Proteasome subunit beta 15 214 - -
Vian4g01874 363 Gene3D - 308 357 - -
Vian4g01874 363 SUPERFAMILY Gamma-glutamyl cyclotransferase-like 235 324 IPR036568 -
Vian4g01874 363 Pfam Gamma-glutamyl cyclotransferase, AIG2-like 234 315 IPR009288 -
Vian4g01874 363 Gene3D - 219 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01874 Vian-Chr4 35230625 35238252 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01874 K02738 - gmx:100793551 453.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01874 4 35230625 35238252 Vian4g01874 4 35230625 35238252 ECH