Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01870 ATGTCTTCCTCTTATCTTCCTGCCACTACTGAGTCACTTGTTCTGGCAAACGAGGCTGCAAGCCCAACTGAGGCCATCTCCATTCTTTATCGGGTACTTGATGATCCTTCTTCTTCACCAGATGCTCTGCGTATGAAAGAGCAAGCAATCACACTCCTCACTAAGCATCTCACGGAAGAGAATAGGGGAGAGGATCTGCGCAGCCTTCTCACTCAGTTGAGGCCATTCTTCTCCTTGATACCCAAGGCAAAAACTGCAAAGATTGTTAGGGGAATTATTGACTCAGTTGCTAAAATACCTGGGACGTCTGATCTCCAAATTGCACTCTGTAAAGAAATGGTGCAATGGACTCGTGCTGAGAAGCGTACCTTTCTGAGACAACGCGTTGAGGCAAGACTTGCAGCACTTCTGATGGAAAATAAGGAGTATTCTGAAGCTTTGACTCTTCTCTCTGGCTTGGTCAAAGAGGTTAGGAGATTAGATGACAAACTTCTTCTGGTTGACATAGACTTGCTGGAGAGCAAGCTGCATTTCTCCTTAAGAAACCTTCCTAAGGCAAAAGCTGCTCTCACGGCTGCAAGAACAGCTGCAAATGCTATTTATGTGCCTCCAGCTCAACAAGGGGCCATAGATCTGCAGAGTGGAATTCTTCATGCTGAGGAGAAGGATTATAAAACTGCTTATAGCTATTTCTTTGAAGCTTTCGAATCATTCAATGCTCTTGATGACCCCAAGGCTGTATTTAGCCTGAAATATATGTTGCTGTGTAAGATCATGGTGAATCAAGCTGATGACGTGGGAGGAATTATTTCCTCTAAAGCAGGACTGCAATATCTTGGGCCTGACTTGGATGCTATGAAAGCTGTTGCTGATGCACACTCTAAGCGGTCCCTTAGGTTGTTTGAAATTGCTCTGCGGGACTACAAGGCACAGTTGGAGGAAGACCCAATTGTCCACAGGCACCTTTCATCCTTGTACGATACCCTACTGGAGCAGAATCTTTGCAGATTGATTGAACCTTTCTCAAGGGTTGAGATTGCACATATTGCTGAACTTATTGAACTTCCCGTTGATCATGTGGAGCGAAAGTTGTCTCAGATGATTTTGGACAAGAAGTTTGCTGGAACATTGGATCAAGGTGCGGGATGCCTTGTCATATTTGACGATCCCAAGACTGATGCTATATACCCTGCAACTCTAGAGACCATTTCCAATATTGGGAAAGTTGTCGACAGTCTTTATGTTAGGTCTGCCAAGATAATGGCATGA 1269 0.446 MSSSYLPATTESLVLANEAASPTEAISILYRVLDDPSSSPDALRMKEQAITLLTKHLTEENRGEDLRSLLTQLRPFFSLIPKAKTAKIVRGIIDSVAKIPGTSDLQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMENKEYSEALTLLSGLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGAIDLQSGILHAEEKDYKTAYSYFFEAFESFNALDDPKAVFSLKYMLLCKIMVNQADDVGGIISSKAGLQYLGPDLDAMKAVADAHSKRSLRLFEIALRDYKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPFSRVEIAHIAELIELPVDHVERKLSQMILDKKFAGTLDQGAGCLVIFDDPKTDAIYPATLETISNIGKVVDSLYVRSAKIMA 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01870 422 Pfam 26S proteasome subunit RPN6 C-terminal helix domain 393 418 IPR040780 -
Vian4g01870 422 SMART PCI/PINT associated module 143 319 - -
Vian4g01870 422 ProSiteProfiles PCI domain profile. 223 391 IPR000717 -
Vian4g01870 422 Pfam 26S proteasome regulatory subunit RPN6 N-terminal domain 20 128 IPR040773 -
Vian4g01870 422 SUPERFAMILY "Winged helix" DNA-binding domain 314 396 IPR036390 -
Vian4g01870 422 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 41 418 - -
Vian4g01870 422 Gene3D - 46 421 - -
Vian4g01870 422 Pfam PCI domain 285 386 IPR000717 -
Vian4g01870 422 Coils Coil 126 146 - -
Vian4g01870 422 FunFam 26S proteasome non-ATPase regulatory subunit 11 46 421 - -
Vian4g01870 422 SUPERFAMILY TPR-like 129 323 IPR011990 GO:0005515
Vian4g01870 422 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 320 403 IPR000717 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01870 Vian-Chr4 35196349 35197617 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01870 K03036 - gmx:100796188 756.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01870 4 35196349 35197617 Vian4g01870 4 35196349 35197617 ECH