Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01868 ATGGGGATAGCAGAAGTGTGCTCCAGGTTCATTGGGGACTTTTTACAAACATTTAAAAGCTCCCCAGAGAGGTCGGTGAGTGAGCATGCATGCAAAGGTGAGAGGATGGTGAAGCTTGATGAGAAGATGGTGGGTGCCCTTGTAACAGTTTTTGGCATGGAAAGCAATGGAAGGATAAAGAAGGAGAGTGCAAGGGAAGTTGTGGAGAAGCTTGGTTTGGGTTCGACGACAGGGTTTGAGCTGGGTGAGTTGATGGATGATGAAGTGCCTGTGGAAGAGGTTCTTGGTGAGTTGGAAGACATGTCAAAGCGCAGTGAGTTGCTGCATGAAGCTTTCAAAATCTTTGATGAAGACGGAGATGGGTACATAGATGCAATGGAGTTGAAGAGGGTGCTTCATTGCTTGGGTTTGGATAAGGGTTGGGATATGAATGCCATTAAAAACATGGTCAAGGTTGCAGATTTGAACTTCGATGGCAAGGTTGATTTTGCTGAGTTTGAATTCATGATGATGGGGTAG 519 0.4566 MGIAEVCSRFIGDFLQTFKSSPERSVSEHACKGERMVKLDEKMVGALVTVFGMESNGRIKKESAREVVEKLGLGSTTGFELGELMDDEVPVEEVLGELEDMSKRSELLHEAFKIFDEDGDGYIDAMELKRVLHCLGLDKGWDMNAIKNMVKVADLNFDGKVDFAEFEFMMMG 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01868 172 CDD EFh 108 171 IPR002048 GO:0005509
Vian4g01868 172 SMART efh_1 107 135 IPR002048 GO:0005509
Vian4g01868 172 SMART efh_1 145 172 IPR002048 GO:0005509
Vian4g01868 172 ProSitePatterns EF-hand calcium-binding domain. 116 128 IPR018247 -
Vian4g01868 172 PANTHER CALCIUM BINDING PROTEIN 49 170 - -
Vian4g01868 172 SUPERFAMILY EF-hand 45 171 IPR011992 -
Vian4g01868 172 Gene3D - 9 172 - -
Vian4g01868 172 Pfam EF-hand domain pair 107 170 IPR002048 GO:0005509
Vian4g01868 172 FunFam Calmodulin A 91 172 - -
Vian4g01868 172 ProSiteProfiles EF-hand calcium-binding domain profile. 103 138 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01868 Vian-Chr4 35181013 35181531 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01868 108 170 EF-hand Containing Proteins AT4G20780 53.968 2.01e-15 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01868 - - var:108321834 335.109