Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01854 ATGAGCAGGACAGGAATGAATTACTCTTTCATCTTGTCAAAATATATTATCTTTCCTTTCAGTGCATTATCATTGATGTCAAAGATTGAAGAAAATATTATGACATTCAAATCCGCCACCGGCATCGTCACAAATTCTGCCAGATCGCAACCGAGGTCACGCGCTCCTTTTCTCGGAAATGTTCCTTTCTCCACCAATTCGGACGCCAGAATCGTGCTGGACCTTCGAGCGGAGGTGGAGCGCGACAGACTCAGGGAGAGAAACGAGCGATTGAGACTCGGTTTGGACACAGCCGACATCGACGCCGAGCCCGAGCAGGATTACATGGGCGTGGAGCCACTCATCGCGAAGCTGACAAAGAAGAACGAGAAGGAATCGGAGGGGGACTTGAATCGCTACGAGGAGCCCACGGACTCCGATGAAGATTCCGACGAGGAAACCCAGGAAGATGCCGACAAACGGCACCGCGACTTCGAGCGCAAGTTCGAGCGCCACCAGGACCTTCTCAAGAGCTTCACCGACGCCGAAACCCTCGATGACGCCTTCAAGTGGATGACCAAAATTGACAAGTTCGAGCACAAGCATTTTCGTCTACGTCCGGAATATAGGGTTATCGGCGAGCTCATGAACCTGCTCAAGGTGGTGACGGAGCAGAAGGATAGGTTTGTTCTGCAGAATAAGCTTAACAGGGCGTTGAGGTTGGTGCAGTGGAAGGAGGCCTATGATCCTGATAACCCTGCCAATTATGGTGTGATACAGCGTGAGCAGCAGGATGCTGCTGCCGCGGCGGATGCACGGGAAGACGCTGAGTTGGAGAAGGAGAAGTTAATTGGGGAAGGGGATGATGGTGAGGAGGAGGAGGAGTTTGATGACATGAAGGAGAAAGATAATGTACTGCTGGCTAAACTTGAGGCTATTGACAGGAAGCTTGAGGAGAAGCTGGCGGAGCTTGAATATACGTTTGGGAGGAAGGGGAAGGCACTGGAGGAAGAGATCAAGGATCTTGCTGAGGAGAGAAATGAATTGACTGAGCAGAAGAGAAAGCCGCTTTACCGGAAGGGTTTTGATACAAGATTGATAGACATGAACCGAACTTGTAAAGTCACCAAGGGAGGACAAGTTGTGAAGTATACTGCTATGGTAGCTTGTGGAAACTATAATGGTGTTATTGGTTTTGCAAAAGCCAAAGGCCCTGCAGTCCCAGTTGCCCTTCAGAAGGCCTACGAGAAATGCTTTCAGAATTTGCATTACGTAGAGCGACATGAGGAGCATACAATTGCCCATGCAATTCAAACTTCTTATAAAAAGACCAAGGTGTATCTCTGGCCTGCTCCAACAACAACTGGTATGAAAGCTGGCAGAACAGTCGAATCCATACTGCACTTGGCTGGTTTAAAGAATGTCAAGTCGAAGGTCATTGGTTCCAGAAATCCTCATAATACAGTTAAGGCTGTCTTCAAAGCACTTAATGCGATTGAAACACCAAGGGATGTTCAAGAGAAATTTGGTAGGACTGTGGTTGAGAAGTATCTGTTGTGA 1539 0.4834 MSRTGMNYSFILSKYIIFPFSALSLMSKIEENIMTFKSATGIVTNSARSQPRSRAPFLGNVPFSTNSDARIVLDLRAEVERDRLRERNERLRLGLDTADIDAEPEQDYMGVEPLIAKLTKKNEKESEGDLNRYEEPTDSDEDSDEETQEDADKRHRDFERKFERHQDLLKSFTDAETLDDAFKWMTKIDKFEHKHFRLRPEYRVIGELMNLLKVVTEQKDRFVLQNKLNRALRLVQWKEAYDPDNPANYGVIQREQQDAAAAADAREDAELEKEKLIGEGDDGEEEEEFDDMKEKDNVLLAKLEAIDRKLEEKLAELEYTFGRKGKALEEEIKDLAEERNELTEQKRKPLYRKGFDTRLIDMNRTCKVTKGGQVVKYTAMVACGNYNGVIGFAKAKGPAVPVALQKAYEKCFQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTTTGMKAGRTVESILHLAGLKNVKSKVIGSRNPHNTVKAVFKALNAIETPRDVQEKFGRTVVEKYLL 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01854 512 Pfam Ribosomal protein S5, C-terminal domain 434 501 IPR005324 GO:0003735|GO:0005840|GO:0006412
Vian4g01854 512 FunFam 30S ribosomal protein S5 305 416 - -
Vian4g01854 512 MobiDBLite consensus disorder prediction 260 278 - -
Vian4g01854 512 SUPERFAMILY Ribosomal protein S5 domain 2-like 424 502 IPR020568 -
Vian4g01854 512 Coils Coil 300 320 - -
Vian4g01854 512 Coils Coil 325 348 - -
Vian4g01854 512 PANTHER RIBOSOMAL S SUBUNIT 139 508 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vian4g01854 512 FunFam 30S ribosomal protein S5 420 511 - -
Vian4g01854 512 MobiDBLite consensus disorder prediction 256 292 - -
Vian4g01854 512 ProSiteProfiles S5 double stranded RNA-binding domain profile. 355 418 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vian4g01854 512 MobiDBLite consensus disorder prediction 119 133 - -
Vian4g01854 512 Coils Coil 252 286 - -
Vian4g01854 512 Pfam Ribosomal protein S5, N-terminal domain 355 419 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vian4g01854 512 MobiDBLite consensus disorder prediction 119 155 - -
Vian4g01854 512 Gene3D - 420 509 IPR014721 -
Vian4g01854 512 Gene3D - 306 416 - -
Vian4g01854 512 SUPERFAMILY dsRNA-binding domain-like 350 420 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01854 K02988 - gmx:100809192 729.939