Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01843 ATGCGCCCACCGGTTATTCTCAAAACTACCTCTCTCTCTGATTCTTATACCTCTCCCTGTGATCGCAGACTCAACACTCTCGCCAGACATTTCATTACCGTTCTTCAACCAATGGCTTCTAACGATGGCATCTCCGCTTCGCCAACCGCTGCTTCTGATTCCGTCTTCAACCACCTCGTTCGTGCGCCTGAAGATCCTATCCTCGGGGTGACGGTTGCGTATAACAAAGATCCGAGTCCAGTTAAGCTCAACTTGGGCGTTGGTGCTTACCGAACTGAGGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGAAGGTTGAGCAGCTACTCATAAATGACTTGTTAGTACCTGACTATACTGTCTCCCTTCTCGTTTCCGATGATATTATGCGGAACTTTTTAGAATGTTCTGTTCTGCATTATTTTCAGCGGACTATATACTTGCCAGCACCAACCTGGGGCAATCACCACAAGGTTTTCAACTTAGCGGGGTTATCTGTCAATACATATCGCTACTATGCTCCAGCAACACGGGGGCTTGACTTTGAAGGACTTCTAGAAGATCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTACATGCATGCGCACATAACCCAACTGGTGTTGATCCAACCCTCGAGCAATGGGAGCAGATTAGGCAGCTAATAAGATTAAAAGCTTTGTTACCTTTCTTTGACAGTGCTTATCAGGCAAGCCTCTTTTGTGTGCTACTAATTCTAGATGCAGATGCCCAACCTGTTCGTTTGTTTGTTGCTGATGGGGGTGAATTGCTGGTAGCACAAAGTTATGCAAAGAATCTGGGTCTTTATGGAGAACGTGTTGGAGCCTTAAGCATTGTATGCAAGTCAGCTGATGTTGCAAGCAGGGTTGAGAGCCAGCTGAAACTCGTGATTAGGCCCATGTACTCGAATCCTCCCATTCACGGTGCATCCATTGTAGCTGCCATTCTCAAGGACGGAGATTTGTTCAATGAGTGGACTATCGAGTTGAAAGGAATGGCTGATCGAATTATCAGTATGCGCCAACAACTTTTTGATGCTTTACGTTCCAGAGGAACACCTGGTGATTGGAGTCACATTATCAAACAAATTGGCATGTTTACTTTCACAGGATTGAATGCTGAACAAGTTTCCTTCATGACTAATGAGTATCATATATACATGACATCTGATGGGAGGATTAGTATGGCCGGTCTAAGTTCCAAAACGGTCCCACATCTGGCTGATGCGATCCATGCAGCTGTAACCGGCGGCGTCTAA 1284 0.4548 MRPPVILKTTSLSDSYTSPCDRRLNTLARHFITVLQPMASNDGISASPTAASDSVFNHLVRAPEDPILGVTVAYNKDPSPVKLNLGVGAYRTEEGKPLVLNVVRKVEQLLINDLLVPDYTVSLLVSDDIMRNFLECSVLHYFQRTIYLPAPTWGNHHKVFNLAGLSVNTYRYYAPATRGLDFEGLLEDLGSAPSGSIVLLHACAHNPTGVDPTLEQWEQIRQLIRLKALLPFFDSAYQASLFCVLLILDADAQPVRLFVADGGELLVAQSYAKNLGLYGERVGALSIVCKSADVASRVESQLKLVIRPMYSNPPIHGASIVAAILKDGDLFNEWTIELKGMADRIISMRQQLFDALRSRGTPGDWSHIIKQIGMFTFTGLNAEQVSFMTNEYHIYMTSDGRISMAGLSSKTVPHLADAIHAAVTGGV 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01843 427 FunFam Aspartate aminotransferase 317 419 - -
Vian4g01843 427 Gene3D - 123 324 IPR015421 GO:0003824
Vian4g01843 427 Pfam Aminotransferase class I and II 144 419 IPR004839 GO:0009058|GO:0030170
Vian4g01843 427 Gene3D Aspartate Aminotransferase, domain 1 53 122 IPR015422 GO:0003824
Vian4g01843 427 SUPERFAMILY PLP-dependent transferases 54 423 IPR015424 -
Vian4g01843 427 Gene3D Aspartate Aminotransferase, domain 1 325 423 IPR015422 GO:0003824
Vian4g01843 427 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 270 283 IPR004838 GO:0003824|GO:0009058|GO:0030170
Vian4g01843 427 PRINTS Aspartate aminotransferase signature 300 325 IPR000796 GO:0006520|GO:0008483
Vian4g01843 427 PRINTS Aspartate aminotransferase signature 229 241 IPR000796 GO:0006520|GO:0008483
Vian4g01843 427 PRINTS Aspartate aminotransferase signature 368 386 IPR000796 GO:0006520|GO:0008483
Vian4g01843 427 PRINTS Aspartate aminotransferase signature 198 217 IPR000796 GO:0006520|GO:0008483
Vian4g01843 427 CDD AAT_like 144 407 - -
Vian4g01843 427 PANTHER ASPARTATE AMINOTRANSFERASE 50 113 IPR000796 GO:0006520|GO:0008483
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01843 Vian-Chr4 34767871 34777128 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01843 K14454 - gmx:547509 666.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01843 4 34767871 34777128 Vian4g01843 4 34767871 34777128 ECH