Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01842 ATGGCGAACCAGGACTACGAAGAGCGCCAACAAACGCAGGAGCTCGGGTACGACCCGAACTTCGTCCCGGACTCTGTGAAATCGTTCGTGGTTCACATGTACCGTCACATCCGCGAGAAGAACGTGTACGAGATCCACCAGATGTATGAGAGTTCGTTCCAGACCCTGTCGGAGCGGCTCTTCAAGGACACGCCGTGGCCCTCCGTGGACGCCGTGGCGCATTACGTGGATAACGACCACGTTTTTTGCCTACTCTACCGCGAGATGTGGTTCCGCCATCTCTACGCGCGCCTCACGCCCACGCTCCGCCAGCGCATCGACTCCTGGGACAACTACTGCAGCCTTTTCCAGGTGGTCCTCCATGGCGTCGTAAACATGCAACTCCCCAACCAGTGGCTGTGGGACATGGTCGACGAGTTCGTCTACCAGTTCCAGAGCTTCTGCCAATACCGTGCCAAGATGAAGAACAAGACCGAACAGGAGATCGCGCTCTTGCGCCAGTTCGACCAGGCCTGGAATGTGTATGGGGTTTTGAACTTCCTTCAGGCGCTGGTGGAGAAGAGTACCATTATTCAGATTCTGGAGCAGGAGAAGGAGGGGCTCGAACAGTTTACTGCCACGGATGGGTATGATTACAATGGGGGGAGTAATGTGTTGAAGGTGCTGGGGTATTTTAGTATGGTGGGGTTGCTTAGGGTTCATTGCTTGCTGGGGGATTATCATACTGGGATCAAGTGTTTGCTTCCTATTGATATTAGTCAGCAAGGGGTTTATACCAGTGTTATTGGGAGTCACATCACCACCATTTATCACTATGGTTTTGCCAATCTCATGCTCCGCAGATTTATTTTGGTGCTTGAACAATGCTTGCTGATTTTGCCATATGTGATCAAACACAGTGAATGTCTCTTGTCTTTACTTGTGAAAGACAGTGAATGGACTTTACCATCTATAGATTCTAATCCATTTGAGGCACTTTGCCCTGACCTAACCAATTACCTTTTTTACAGATATGTGGAAGCAATTCGAGAATTTAACAAAATTCTCTTGTACATCTTCAAGACAAAACAGTATCACCAGAAATCACCCCAGTATGAGCAGATACTGAAGAAAAATGAACAAATGTATGCCTTGCTGGCAATTTGTCTTTCACTCTGTCCCCAAACTAGGCTTGTTGATGAAACTGTGAACTCTCAGTTACGGGAGAAGTATGGTGAGAAGATGTCTAGAATGCAGCGATATGACGATGAGGCATTTGCTATCTATGATGAGCTCTTCTCATATGCATGCCCTAAGTTCATTACCCCTTCAGCTCCTAGTTTTGAGGAGCCTCTTATAAATTATAATCAGGATGCCTATAGACTTCAATTAAAACTGTTCCTTTATGAAGCAAAGCAGCAACAGTTGTTATCAGGTGTTCGGACCTTCTTGAAAGTGTATTCAACAATCTCCCTTGCAAAACTTGCGAGTTATATGGAAGTGGATGAACCCACCTTAAGGACTATCTTGATGACATACAAGCACAAGACACATGCTGTTGATAGTGATGGGAAAATTACATCCAATGCCGATGTAGATTTCTATATTGATGAGGACACAATTCATGTTGTGGAGTCCAAGCCTGGGAAACGTTATGGTGATTACTTTTTGCGTCAGATTGTCAAGCTTGAAGGGGTGATCAATGAGATGGACGGTATAAAGCTGGATTGA 1710 0.462 MANQDYEERQQTQELGYDPNFVPDSVKSFVVHMYRHIREKNVYEIHQMYESSFQTLSERLFKDTPWPSVDAVAHYVDNDHVFCLLYREMWFRHLYARLTPTLRQRIDSWDNYCSLFQVVLHGVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEIALLRQFDQAWNVYGVLNFLQALVEKSTIIQILEQEKEGLEQFTATDGYDYNGGSNVLKVLGYFSMVGLLRVHCLLGDYHTGIKCLLPIDISQQGVYTSVIGSHITTIYHYGFANLMLRRFILVLEQCLLILPYVIKHSECLLSLLVKDSEWTLPSIDSNPFEALCPDLTNYLFYRYVEAIREFNKILLYIFKTKQYHQKSPQYEQILKKNEQMYALLAICLSLCPQTRLVDETVNSQLREKYGEKMSRMQRYDDEAFAIYDELFSYACPKFITPSAPSFEEPLINYNQDAYRLQLKLFLYEAKQQQLLSGVRTFLKVYSTISLAKLASYMEVDEPTLRTILMTYKHKTHAVDSDGKITSNADVDFYIDEDTIHVVESKPGKRYGDYFLRQIVKLEGVINEMDGIKLD 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01842 569 Hamap Eukaryotic translation initiation factor 3 subunit L [EIF3L]. 6 558 IPR019382 GO:0003743|GO:0005737|GO:0005852
Vian4g01842 569 ProSiteProfiles PCI domain profile. 344 543 IPR000717 -
Vian4g01842 569 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 5 294 IPR019382 GO:0003743|GO:0005737|GO:0005852
Vian4g01842 569 Pfam RNA polymerase I-associated factor PAF67 104 288 IPR019382 GO:0003743|GO:0005737|GO:0005852
Vian4g01842 569 Pfam RNA polymerase I-associated factor PAF67 335 555 IPR019382 GO:0003743|GO:0005737|GO:0005852
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01842 K15029 - gmx:100804691 941.414
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01842 4 34749522 34752667 Vian4g01842 4 34749522 34752667 ECH