Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01840 ATGGTAAATGCCTTAGTTGAGCGTGCCACAAGCAGCATGCTTGTGGGCCCTGATTGGGCTTTGAACATGGAGATCTGTGACATACTCAATCGCGACCCTGGGCAAACAAAGGATGTTATTAAAGGTATAAAGAAGCGGCTTGGAAGTAAAGTTCCTAGAGTTCAAATAAGTGCATTAACTCTTTTGGAGACAATAATTAAGAATTGTGGAGACATTATACACATGCATGTTGCCGAGAGAGATGTTCTTCATGAGATGGTTAAAATAGCAAAGAAGAAGATCAATTATCAGGTCCGAGAGAAGATATTGGCTCTTATAGATAGTTGGCAAGAGGCTTTTGGAGGGCCAAGATCAAGATATCCACAGTATTATGCAGCATACCAGGAGCTTTTGCGTGCTGGGGCAATATTCCCTCAGAGGTCTGAGCGATCTGCACCTGTATTCACACCGGTACAAACACAACCATTGTCATCATACCCTCAAAATATACGAGATACTTTTACTCAACAAGACACAGCTGAGTCCTCTGCAGATTCTGAGTTTCCAGCCCTAAGTTTGTCAGAAATTCAAAATGCACGTGGTATTATGGATGTTCTTGCAGAAATGCTCAATGCATTGGACCCTGGTAACAAAGAAGGTCTTCAGCAGGAAGTTATTGTTGATTTAGTGGAGCAATGTCGAACATACAAGCAGAGAGTGGTACACCTTGTTAATTCAACTTCGGACGAATCATTGCTATGCCAAGGCTTATCTCTGAATGATGATCTTCAGCGTGTCTTGGCCAAGCATGAATCCATTGCTTCGGGAACTTCTGCTTCAGGAACTTCTTCAGGAACTCCTGCTCAAAATCATACTGAGAATCTGAAGATTGCACCTACTGGAACACTTGTAGATTTTGATGGTCCTTTGGTTGATTTTGGAGATACCAGTAAACAGACGGATGGAAGGTCGTCTGCTAATGCTGAAACTGGGTCTCAATCTTTGAACCAGTTACTGCTTCCAGCGCCCCCAATATCAAATGAATCAGCTCCCCCTCCGAAGGTTGATCCTAAAGTGGACCTGCTCAGTGGTGACGACTATAACTCACCAAAAGCAGAGACTTCACTTGCTCTCGTTCCTTTAGGCGAACAGCAGCCAGCCAGCCCTATGTCTCAACAGAATGCCCTTGTTCTTTTTGATATGTTTTCTAATGGAAGCAATCCACCTACTTCTGTTAATATCCAGCCAATTAATGTTGCCGGTCAAACCAGTCCATTTTCTCCTCAATGTCAACAGCAGCAGACTTTCATATCTCAAGGGCTGTTTTACCCCAATGGAGGTGGGCCAAATGTTGGATCACCTCGGTATGATCAATCACCGTATATGCAGAGCACAGGTCCTTCTTGGAATGGCCAGGTTGCGCAGCAGCAACAGCCTCCTTCACCAGTTTACGGTACAACAAGTGGTGGATCATTTCCGCCGCCTCCATGGGAAGCACAACCTACAGACAATGATAGTCCAGTATCGGGCAGTCAATACCCACAACCATTGCAAGTCACTCAAGTGGTAATGACGCATATACAAAGTGCTGCACATCCTCAGGGACCTCAAGCGGCGGGGCATGACCAGGCTGTTGGAATGTATATGCAACCAAATGCTAGTCATATCTCAACAATCAACAACAATGTTCAAAGTAATCAATCAGGCTTGTACCCGCAGCATATTCAGGGTGTTGCCAGTCCCTATATGGGTATGGCTTCACATCCAATGCATTCCATGTATCCTCAACAAATGTATGGCAACCAATTCGTAGGATATGGCTATGGTCAGCAACCAGCGGTTCAGTATGTTGAGCAGCAAATGTATGGTTTATCGATGAGAGATGATGGTGCTCTGAGAAATTCTTACCAGGTTTCTTCTGCATCCTATGTGCCACCTATGAAGCCTTCCAAACCAGAGGATAATTTATTTGGGGACCTTGTTAACTTGGCAAAAGTGAAACCAAAACCAACTGCTGACCGAACTGGTGGCGTGTAA 2016 0.4454 MVNALVERATSSMLVGPDWALNMEICDILNRDPGQTKDVIKGIKKRLGSKVPRVQISALTLLETIIKNCGDIIHMHVAERDVLHEMVKIAKKKINYQVREKILALIDSWQEAFGGPRSRYPQYYAAYQELLRAGAIFPQRSERSAPVFTPVQTQPLSSYPQNIRDTFTQQDTAESSADSEFPALSLSEIQNARGIMDVLAEMLNALDPGNKEGLQQEVIVDLVEQCRTYKQRVVHLVNSTSDESLLCQGLSLNDDLQRVLAKHESIASGTSASGTSSGTPAQNHTENLKIAPTGTLVDFDGPLVDFGDTSKQTDGRSSANAETGSQSLNQLLLPAPPISNESAPPPKVDPKVDLLSGDDYNSPKAETSLALVPLGEQQPASPMSQQNALVLFDMFSNGSNPPTSVNIQPINVAGQTSPFSPQCQQQQTFISQGLFYPNGGGPNVGSPRYDQSPYMQSTGPSWNGQVAQQQQPPSPVYGTTSGGSFPPPPWEAQPTDNDSPVSGSQYPQPLQVTQVVMTHIQSAAHPQGPQAAGHDQAVGMYMQPNASHISTINNNVQSNQSGLYPQHIQGVASPYMGMASHPMHSMYPQQMYGNQFVGYGYGQQPAVQYVEQQMYGLSMRDDGALRNSYQVSSASYVPPMKPSKPEDNLFGDLVNLAKVKPKPTADRTGGV 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01840 671 Gene3D - 1 148 IPR008942 -
Vian4g01840 671 MobiDBLite consensus disorder prediction 449 481 - -
Vian4g01840 671 MobiDBLite consensus disorder prediction 301 326 - -
Vian4g01840 671 Pfam VHS domain 3 130 IPR002014 GO:0035091|GO:0043130
Vian4g01840 671 CDD GAT_GGA-like_plant 188 266 - -
Vian4g01840 671 ProSiteProfiles GAT domain profile. 180 268 IPR004152 GO:0035091|GO:0043130
Vian4g01840 671 MobiDBLite consensus disorder prediction 266 285 - -
Vian4g01840 671 PANTHER TOM1-LIKE PROTEIN 1 662 IPR044836 GO:0035091|GO:0043130|GO:0043328
Vian4g01840 671 SUPERFAMILY GAT-like domain 140 269 - -
Vian4g01840 671 Gene3D - 182 275 IPR038425 -
Vian4g01840 671 FunFam TOM1-like protein 2 182 272 - -
Vian4g01840 671 SUPERFAMILY ENTH/VHS domain 3 139 IPR008942 -
Vian4g01840 671 CDD VHS 2 132 - -
Vian4g01840 671 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091|GO:0043130
Vian4g01840 671 MobiDBLite consensus disorder prediction 432 506 - -
Vian4g01840 671 FunFam TOM1-like protein 2 1 148 - -
Vian4g01840 671 Pfam GAT domain 194 268 IPR004152 GO:0035091|GO:0043130
Vian4g01840 671 SMART VHS_2 2 134 IPR002014 GO:0035091|GO:0043130
Vian4g01840 671 MobiDBLite consensus disorder prediction 310 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01840 Vian-Chr4 34730994 34738356 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01840 - - gmx:100805762 1105.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01840 4 34730994 34738356 Vian4g01840 4 34730994 34738356 ECH