LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian4g01833	ATGGCCATGGCGATTAGGGTTTTTCTCCTCCTTCTCTTCTTTCTCTCATCAACTAATATCGGTTTTTCTCTTTTCGAAGATCAAGTTGGTCTCATGGATTGGCACCAGCAGTACATCGGGAAAGTAAAGCACGCTTTGTTCCACACTCAAAAGACTGGCCGGAAGCGTGTTTTGGTGTCCACTGAAGAGAGCGTTGTAGCTTCACTCGACCTTCGTCATGGAGAAATTTTTTGGAGGCATGTTCTTGGGACCAACGATGTTGTTGATGGACTTGACATTGCCCTGGGAAAATATGTCATAACTCTTTCGTCGGATGGAAGTATATTGAGAGCATGGAACCTTCCTGATGGGCAGATGGTTTGGGAGACTTCCCTTCAAGGCTCAAAGACATCAAAGTCAATATTATACATTTCAAAAAACCCGAAAGCTGACAAGGATGATTTGATCCTTGTTTTTGGTAAAGGTAGTCTCCATGCTGTTTCCGGCATAGATGGTGAAGTTCTCTGGAGGAAAGATTTTGCAGGTGAAAGCATTGAGGTTAGCCATATTATTCAGTCCACTGACAAGATCTATGCTGCTGGTTTTGTTGGATCTTCAAAGTTTTATGTTTATGGATTGAATGCTGATACTGGAAAATTGCTCAAGGATGATCATACAATACTTCCCTGTGATACTTTTGGGGAATTATTATCTGTCTCAGGTGATAAGTTTGTGGTACTGGATAAGATGAGGTCTAAGATATTGACGATAAACATCAAGAATGGAGAGATTAGTTACAAACAGAAGCTCATTTCAGACCTCATCAAGGATTCATCTGGACAGGCAGTAATATTACCATCAAGGCTCCCTGAGTTATTTGCATTGCGTATTGACTCCCATGTTCTTACAATTAAAGTGACAAATGAAGATGACTTGGTGCTGGTGGACAAAATTAATAATGCAGCGGCTGTTAGTGATGCTCTGTCAATCTCAGAGGGTCAACATTCTTTTGCATTTATTCAGCATGAAGGCAGTAATATTCACCTATTTGTAAAGGACGTTAATGATTGGAATGGTGATTTACTAAAGGAAAGTATAATAATAGACCATCAAAGAGGGAACATTGAGAAGATTTTTATAAACAATTATGTGAGGACAGATAGATCGTACGGTTTTAGAGCATTGATGGTAATGGAAGATCATTCGCTATTATTAGTACAACAAGGAGAAATTGTCTGGACTAGAGAGGATGGTCTTGCATCAGTTGTAGATGTCACAACGTCTGAACTACCTGTGGAAAAGGAAGGTGTATCGGTGGCAAAAGTGGAACAGAACCTCTTTGAATGGCTTAAGGGACATGTGCTGAAGCTCAAAGGAACTTTAATGATTGCAAGCCCTGAGGATGTAGTCGCTATTCAAGCGCTGAGATTAAGGAGTTCTGAGAAAAGCAAAATGACTCGTGATCATAATGGTTTTCGTAAGTTGCTTATAGTACTTACAAGGGCAGGAAAGGTTTTTGCTTTGCACACTGGAGATGGTCGTGTAGTTTGGTCTATTCTACTTCATACACTGCGTAAAACAGAAGTGTGTGAACATCCCGTTGGGCTTAACATTTATCAGTGGCAGGTTCCGCATCATCATGCCTTGGATGAGAATCCATCTATCCTTGTAGTTGGGCGATGTGGGCCAAGTTTGGCTGCACCAGCTGCTCTTTCTTTTATTGATGCATACACAGGGAAGGAACTCAATTCTTTAAGACTTGCTCATACCATTGCTCAAGTTATTCCTCTGCCTTATACCGATTCAACTGAACAGCGGCTGCATCTAATTATAGACATAGACCGACATGCATACCTATACCCAAGAACTCCTGAAGCTATTGGCATTTTGCAACGTGAGTTTTCAAATGTATATTGGTACTCAGTTGAGGCTGATAATGGTATTGTCAGAGGTCATGCCTTGAAGAGTAATTGCATTCACAAAATAGTTGATGAATACTGCTTTGATTTCCGGGATTTATGGTCTATTGTATTCCCATCTGAATCAGAAAAGATTATTGCAACGGTAACCAGAAAATCGAATGAGGTTGTTCATACTCAAGCAAAAGTTATGACTGACTATGATGTCATGTATAAGTATGTATCGAACAATATACTTTTTGTCGCAAATGCAGCACCTAAAGCCACAGGGGAAATTGGAACAGCCACCCCTGAGGAGGCTTGGTTGGTCATCTATATCATTGATACTGTGACTGGCCGTATATTGCATAGAATGACACATCATGGTTGCCAGGGTCCTGTTCATGCGGTATTTAGTGAAAACTGGGTTGTCTATCACTATTTTAATCTCAGAGCACACAGATATGAGATTTCAGTTATCGAGGTCTATGATCAGTCTCGAGCGGATAACAAAGATGTCTGGAAGTTTGTTCTTGGGAAGCATAACCTTACATCACCCATTTCTTCTTATTATCGACCAGAAGTTACAACAAAATCACAGTCGTACTTTTTTACCCATTCTGTGAAAGCAATAGAAGTGACTTTGACATCCAAGGGTATAACTTCTAAGCAGCTTCTTATTGGAACAATTGGTGATCAGGTTTTGGCACTTGATAAACGCTTTTTGGATCCTCGGCGCACACTTAATCCCTCGCAAGCTGAGAAAGAGGAAGGAATTATTCCTCTGACCGATTCATTGCCCATCATATCTCAGTCCTATATTACACATTCCCTTAAAGTGGAAGGTCTGCGGGGCATCGTAACAGTGCCTGCCAAGCTGGAGTCTACATCCCTCGTCTTTGCCTACGGAGTGGATCTATTTTTAACTCAGATTGCTCCTTCTAGGACTTACGATTCATTAACTGAAGATTTCAGCTATGCTCTACTTCTTCTAACAATTGTTGCACTTGTGGCTGCAATATTTGTCACTTGGGTATTATCCGAGAGGAAAGATCTACAAGAGAAATGGAAATGA	2952	0.4072	MAMAIRVFLLLLFFLSSTNIGFSLFEDQVGLMDWHQQYIGKVKHALFHTQKTGRKRVLVSTEESVVASLDLRHGEIFWRHVLGTNDVVDGLDIALGKYVITLSSDGSILRAWNLPDGQMVWETSLQGSKTSKSILYISKNPKADKDDLILVFGKGSLHAVSGIDGEVLWRKDFAGESIEVSHIIQSTDKIYAAGFVGSSKFYVYGLNADTGKLLKDDHTILPCDTFGELLSVSGDKFVVLDKMRSKILTINIKNGEISYKQKLISDLIKDSSGQAVILPSRLPELFALRIDSHVLTIKVTNEDDLVLVDKINNAAAVSDALSISEGQHSFAFIQHEGSNIHLFVKDVNDWNGDLLKESIIIDHQRGNIEKIFINNYVRTDRSYGFRALMVMEDHSLLLVQQGEIVWTREDGLASVVDVTTSELPVEKEGVSVAKVEQNLFEWLKGHVLKLKGTLMIASPEDVVAIQALRLRSSEKSKMTRDHNGFRKLLIVLTRAGKVFALHTGDGRVVWSILLHTLRKTEVCEHPVGLNIYQWQVPHHHALDENPSILVVGRCGPSLAAPAALSFIDAYTGKELNSLRLAHTIAQVIPLPYTDSTEQRLHLIIDIDRHAYLYPRTPEAIGILQREFSNVYWYSVEADNGIVRGHALKSNCIHKIVDEYCFDFRDLWSIVFPSESEKIIATVTRKSNEVVHTQAKVMTDYDVMYKYVSNNILFVANAAPKATGEIGTATPEEAWLVIYIIDTVTGRILHRMTHHGCQGPVHAVFSENWVVYHYFNLRAHRYEISVIEVYDQSRADNKDVWKFVLGKHNLTSPISSYYRPEVTTKSQSYFFTHSVKAIEVTLTSKGITSKQLLIGTIGDQVLALDKRFLDPRRTLNPSQAEKEEGIIPLTDSLPIISQSYITHSLKVEGLRGIVTVPAKLESTSLVFAYGVDLFLTQIAPSRTYDSLTEDFSYALLLLTIVALVAAIFVTWVLSERKDLQEKWK	983

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian4g01833	983	Pfam	ER membrane protein complex subunit 1, C-terminal	765	982	IPR011678	-
	Vian4g01833	983	SMART	ire1_9	705	752	IPR018391	-
	Vian4g01833	983	SMART	ire1_9	482	513	IPR018391	-
	Vian4g01833	983	SMART	ire1_9	92	124	IPR018391	-
	Vian4g01833	983	SMART	ire1_9	127	172	IPR018391	-
	Vian4g01833	983	FunFam	Os05g0230600 protein	32	338	-	-
	Vian4g01833	983	Gene3D	-	34	326	IPR015943	GO:0005515
	Vian4g01833	983	PANTHER	UNCHARACTERIZED	2	983	IPR026895	GO:0072546
	Vian4g01833	983	Pfam	PQQ-like domain	53	133	IPR002372	-
	Vian4g01833	983	SUPERFAMILY	Quinoprotein alcohol dehydrogenase-like	402	770	IPR011047	-
	Vian4g01833	983	SUPERFAMILY	Quinoprotein alcohol dehydrogenase-like	56	529	IPR011047	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian4g01833	K23562		-	gmx:100807708	1797.71

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vian4g01833	4	34653427	34660889	Vian4g01833	4	34653427	34660889	ECH