Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01821 ATGAGCCCGACAGCGTCTGACTCTAAATGCTCAGTCCATCAACTGGAAAACATAGATGAGAATGCTCCTGCAGATTGGACTGCATCATCCTGTCCCCCACCTGATACTCCAACTGAGTCTATGGAGTTCCTTGCTAGATCATGGAGTCTTTCCGCCATGGAACTCTCTAAAGCATTGCACAGCACCAACATTGCGATCTCCACCAGTATAGATATGCCACTTTCTTGCCCTTCAGGTCACCAATTTGATACTAAGAGTTCCACTGCTTCAAAGGATTTATCTAACTGTTGTTATCCTCCAATTTCACCCAGTGACAGTAGCGAAAAGAAGGATTTACTTTTACTCCATCAAGCACTCAGTACAGAATTCCTTTCCAGTCAAAACATACTCAGAAATGGGCTTTACAGGAGTTTGCTAAGAGGGAGAACAATGGGTAGGTGGTTGAAAGATCAAAAGGAGAGGAAAAAGCAGGAAATTAGGACCCATAACGCTCATTTGCATGCTGCGGTATCTGTGGCTGGTGTTGCTGCTGCTATTGCGGCGGTGGCAGCATCAACAGCATCACCTGAAATGCCTTATTCCAACCCAAAGTCCCCTCCTCCCCTGGCTTCTGCTGCAATTGCATCTGCAGCAGCTTTAGTAGCCTCTCACTGCATTGAGATTGCAGAAGATATGGGAGCTGAACATGACCAAATCTTAACAGTAGTCAACTCCGCCATTAATGCAAAAACCAATGGAGATATTATGACTTTAACAGCCGGAGCAGCCACAGCCTTGCGAGGAGCTGCTACGCTAAAGGCAAGGCTGCAAAAGGGGCCTGGAGCAACTGCCATTCCTCTAGTTGAAGAAAAGTGTAACGAAAGCAAAGAAGCAAACATCTTGACAGCACTGGACTATGTTTTTAAAGGAGGAGAACTTCTCAAACGTACAAGAAAAGGAGATCTTCACTGGAAGCAAGTTTCTTTCAATATAAATTCAAATTTGCAGGTTGTAGTCAAAATGAAAAGCAAACATATGGGAGGAACATTCACAAAAAAGAAGAAATATATAGTGACCGGCCTTTGCAATGATATCCCAGCATGGCCTGGAAGGGAGAGAGAAGACACCAATGAAAAGAGGGCATACTTTGGAATAAAAACAACGGACAGGACCATAGAATTTGAATGTGGAAGTAAAGGAGACAAACAGTTCTGGCTCGAGGGTATCCAGTACATGTTGAATTGCCGTGTCAAAGTAACATTATGA 1245 0.4402 MSPTASDSKCSVHQLENIDENAPADWTASSCPPPDTPTESMEFLARSWSLSAMELSKALHSTNIAISTSIDMPLSCPSGHQFDTKSSTASKDLSNCCYPPISPSDSSEKKDLLLLHQALSTEFLSSQNILRNGLYRSLLRGRTMGRWLKDQKERKKQEIRTHNAHLHAAVSVAGVAAAIAAVAASTASPEMPYSNPKSPPPLASAAIASAAALVASHCIEIAEDMGAEHDQILTVVNSAINAKTNGDIMTLTAGAATALRGAATLKARLQKGPGATAIPLVEEKCNESKEANILTALDYVFKGGELLKRTRKGDLHWKQVSFNINSNLQVVVKMKSKHMGGTFTKKKKYIVTGLCNDIPAWPGREREDTNEKRAYFGIKTTDRTIEFECGSKGDKQFWLEGIQYMLNCRVKVTL 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01821 414 Pfam Auxin canalisation 34 278 IPR008546 -
Vian4g01821 414 PANTHER EXPRESSED PROTEIN 25 409 IPR040269 -
Vian4g01821 414 Gene3D - 281 412 IPR011993 -
Vian4g01821 414 Pfam Plant pleckstrin homology-like region 305 408 IPR013666 -
Vian4g01821 414 SUPERFAMILY PH domain-like 300 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01821 Vian-Chr4 34501175 34504699 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01821 - - gmx:100814154 696.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01821 4 34501175 34504699 Vian4g01821 4 34501175 34504699 ECH